Volume 10, Number 9—September 2004
Research
Genetic Divergence and Dispersal of Yellow Fever Virus, Brazil
Pedro F.C. Vasconcelos*
, Juliet E. Bryant†, Amelia P.A. Travassos da Rosa†, Robert B. Tesh†, Sueli G. Rodrigues*, and Alan D.T. Barrett†
, Juliet E. Bryant†, Amelia P.A. Travassos da Rosa†, Robert B. Tesh†, Sueli G. Rodrigues*, and Alan D.T. Barrett†Table A1
Virus isolates used in this study
| Isolate | Strain ID | Passage levela | Sourceb | Statec | Community | Biotoped/Climatee |
|---|---|---|---|---|---|---|
| JSS | Brazil35 (38) | Mosq1, SM8 | Humanunk | MT | No data | WC/EHW |
| Be H111 | Brazil54 (39) | c6/36, SM10 | Human * | PA | Oriboca | EA/EHW |
| BeAr 162 | Brazil55B | SM4, C6/36#1 | Hg. janthinomys | PA | Pirelli Marituba | EA/EHW |
| BeAr 189 | Brazil55C (39) | sm1 c6/36#1 | Sabethes sp. | PA | Pirelli Marituba | EA/EHW |
| BeAn 23536 | Brazil602 | SM1 c6/36#1 | Cebus sp. | PA | Belém Brasília Km94 | EA/EHW |
| BeAr 46299 | Brazil62A (39) | c6/36 | Haemagogus sp. | PA | Belém Brasília Km94 | EA/EHW |
| BeAr 44824 | Brazil62B (39) | SM1 c6/36#1 | Haemagogus sp. | PA | Belém Brasília km87 | EA/EHW |
| BeAn142028 | Brazil68A2 | c6/36#1 | Saguinus sp. | PA | Abaetetuba | EA/EHW |
| BeH141816 | Brazil68B | SM3, c6/36#1 | Humanunk | PA | Abaetetuba | EA/EHW |
| BeAr142658 | Brazil68C (39) | SM2, c6/36#1 | Haemagogus sp. | PA | Barcarena | EA/EHW |
| BeAn142027 | Brazil68D (39) | Original | Saguinus midas | PA | Abaetetuba | EA/EHW |
| BeH171995 | Brazil69A | SM1 c6/36#1 | Human + | PA | Belém | EA/EHW |
| BeH203410 | Brazil71 (39) | SM2, c6/36#1 | Humanunk | PA | Peixe Boi | EA/EHW |
| BeAr233164 | Brazil73A (39) | Mosq 4 | Hg. janthinomys | GO | Goiás | WC/TMW |
| BeAr232869 | Brazil73B (39) | Mosq 1, SM2 | Haemagogus sp. | GO | Goiás | WC/TMW |
| BeAr233436 | Brazil73C (39) | Original | Haemagogus sp. | GO | Bela Vista | WC/TMW |
| BeH233393 | Brazil73D | SM1 c6/36#1 | Human+ | GO | Mara Rosa | WC/TMW |
| BeH291597 | Brazil75 | SM2, Mosq 1 | Human + | MT | Aripuanã | WC/EHW |
| BeAr301129 | Brazil76A | SM1 c6/36#1 | Haemagogus sp. | PA | Alenquer | EA/EHW |
| BeH301035 | Brazil76B | SM1 c6/36#1 | Human * | PA | Alenquer | EA/EHW |
| BeH324213 | Brazil77 | SM1 c6/36#1 | Human * | PA | Altamira | EA/EHW |
| BeH350698 | Brazil78A (38,39) | SM2, Mosq 1 | Human unk | PA | Tomé Acu | EA/EHW |
| BeAr350397 | Brazil78B | SM2, Mosq 1 | Haemagogus sp. | PA | Faz. Cangalha Formosa | EA/EHW |
| BeH340824 | Brazil78C | SM1 c6/36#1 | Human + | PA | Belterra-Santarém | EA/EHW |
| BeH371220 | Brazil79A | SM1 c6/36#1 | Human + | PA | Altamira | EA/EHW |
| BeAr378600 | Brazil80A | SM2, C6/36#1 | Haemagogus sp. | GO | Uruacu | WC/TMW |
| BeH385780 | Brazil80B (39) | SM1 c6/36#1 | Human + | PA | Altamira | EA/EHW |
| BeH379501 | Brazil80C | SM2 | Human + | MA | Montes Altos | NEW/EHS |
| BeH394880 | Brazil81 | Original, C6/36#1 | Human * | PA | Conceição Araguaia | EA/EHW |
| BeH403366 | Brazil82A | SM1 c6/36#1 | Human + | MA | Amarante do Maranhão | NEW/EHS |
| BeH405954 | Brazil82B | SM1 c6/36#1 | Human * | PA | Altamira | EA/EHW |
| BeH 413820 | Brazil83 | SM1 c6/36#1 | Human + | RO | Porto Velho | WA/EHW |
| BeH425381 | Brazil84A (39) | c6/36 | Human + | AP | Tribo Oyampi | NA/EHW |
| BeAn 424208 | Brazil84B | Original, C6/36#1 | Chiropotes satanas | PA | Tucuruí | EA/EHW |
| BeAr424719 | Brazil84C | SM1 c6/36#1 | Haemagogus sp. | PA | S. Domingos | EA/EHW |
| BeAr424083 | Brazil84D | SM1 c6/36#1 | Hg. albomaculatus | PA | Monte Alegre | EA/EHW |
| BeAr424492 | Brazil84E | SM1 c6/36#1 | Hg. janthinomys | PA | Faro | EA/EHW |
| BeH422255 | Brazil84F | SM1 c6/36#1 | Human + | PA | Faro | EA/EHW |
| BeH423602 | Brazil84G | SM1 c6/36#1 | Human + | PA | S. Domingos | EA/EHW |
| BeH422312 | Brazil84H | SM1 | Human + | PA | Monte Alegre | EA/EHW |
| BeH436823 | Brazil85A | SM1 c6/36#1 | Human + | MT | Sinop | WC/EHW |
| BeAr437159 | Brazil85B | SM1 c6/36#1 | Hg. janthinomys | MT | Sinop | WC/EHW |
| BeH463676 | Brazil87 | SM1 c6/36#1 | Human + | PA | Breves | EA/EHW |
| BeH474245 | Brazil88A | SM1 c6/36#1 | Human + | GO | Caiapônia | WC/TMW |
| BeH474297 | Brazil88B | SM1 c6/36#1 | Human + | MG | Paracatu | SE/TSS |
| BeH485717 | Brazil89 | SM1 c6/36#1 | Human + | MG | Francisco Dumont | SE/TSS |
| BeAr 511437 | Brazil91A2 | SM1, C30c6/36#1 | Hg. janthinomys | PA | Barcarena | EA/EHW |
| BeH511843 | Brazil91B | SM1, C6/36#2 | Human + | RR | Tribo Yanomamy | WA/EHS |
| BeAn 510268 | Brazil91C | SM1 c6/36#1 | Alouatta sp. | GO | Goiás | WC/TMW |
| BeAr 512943 | Brazil92A (39) | SM1 C6/36-1 Vero2 | Hg. janthinomys | MS | Sidrolândia | WC/TMW |
| BeAr513008 | Brazil92B (39) | SM1 c6/36#1 | Sabethes sp. | MS | Sidrolândia | WC/TMW |
| BeH512772 | Brazil92C (39) | SM2, C6/36#1 | Human unk | MS | Campo Grande | WC/TMW |
| BeAr513060 | Brazil92D | SM1 c6/36#1 | Haemagogus sp. | MS | Campo Grande | WC/TMW |
| BeAr 513292 | Brazil92E (39) | SM1 C6/36-1 Vero1 | Sabethes cloropterus | MS | Jaraguarí | WC/TMW |
| BeH520988 | Brazil93A | SM1 c6/36#1 | Human + | MA | Barra do Corda | NEW/EHS |
| BeH521244 | Brazil93B | SM1 c6/36#1 | Human * | MA | Mirador | NEW/EHS |
| BeAr 527785 | Brazil94A (39) | SM1 c6/36#1 | Sabethes cloropterus | MG | Arinos | SE/TSS |
| BeAr527198 | Brazil94B (39) | SM1 c6/36#1 | Haemagogus sp. | MG | Arinos | SE/TSS |
| BeAr527547 | Brazil94C | SM2, vero1 | Haemagogus sp. | PA | Don Eliseu | EA/EHW |
| BeH526722 | Brazil94D | SM2, c6/36#1 | Human + | MG | Arinos | SE/TSS |
| BeAr528057 | Brazil94E | Original, C6/36#1 | Hg. janthinomys | MG | Arinos | SE/TSS |
| BeAr527410 | Brazil94F | Original, C6/36#1 | Hg. janthinomys | MA | Pastos Bons | NEW/EHS |
| BeH535010 | Brazil95 | SM2, c6/36#1 | Human + | MA | Pastos Bons | NEW/EHS |
| BeAr 544276 | Brazil96A (39) | SM1 c6/36#1 | Hg. janthinomys | RO | Cabixi | WA/EHW |
| BeAn 604552 | Brazil98A | Original, C6/36#1 | Alouatta belzebul | PA | Afua | NA/EHW |
| BeAr603401 | Brazil98B | Original, C6/36#1 | Hg. janthinomys | PA | Altamira | EA/EHW |
| BeAr605158 | Brazil98C | SM1 c6/36#1 | Hg. janthinomys | PA | Afuá | NA/EHW |
| BeH603325 | Brazil98D | Original, C6/36#1 | Human unk | PA | Afuá | EA/EHW |
| BeH605427 | Brazil98E | SM1 c6/36#1 | Human + | PA | Carajas | EA/EHW |
| BeAr614320 | Brazil99B | SM2 | Haemagogus sp. | PA | Breves | NA/EHW |
| BeAr617127 | Brazil99D | SM1 c6/36#1 | Hg. janthinomys | TO | Monte do Carmo | EA/EHS |
| BeH613582 | Brazil99E | SM1 c6/36#1 | Human * | PA | Breves | NA/EHW |
| BeAr628124 | Brazil00A (39) | SM1 c6/36#1 | Hg. janthinomys | TO | Paranã | EA/EHS |
| BeH 622491 | Brazil00B | SM1 | Human + | DF | Brasilia | WC/THA |
| BeAn625923 | Brazil00C | Original, C6/36#1 | Alouatta sp. | GO | Goiás | WC/TMW |
| BeH 622205 | Brazil0D | SM1 c6/36#1 | Human * | GO | Goiás | WC/TMW |
| BeAr630768 | Brazil01A | SM1 | Hg. janthinomys | GO | Alto Paraiso | WC/TMW |
| BeAr631464 | Brazil01B | SM1 c6/36#1 | Sa. chloropterus | BA | Jaborandi | NED/THA |
| BeAr645693 | Brazil01D | SM1 c6/36#1 | Haemagogus | MG | Uberaba | SE/TSS |
aPassage history of seed strain in collection. SM, suckling mouse.
bOutcome of human cases, unk = unknown, + = fatal, * = recovered.
cAP, Amapa; BA, Bahia; DF, Federal District; GO, Goiás; MA, Maranhão; MG, Minas Gerais; MS, Mato Grosso do Sul; MT, Mato Grosso; PA, Pará; RO, Rondônia; RR, Roraima; TO, Tocantins.
dEA, East Amazon; NA, Northern Amazon; NED, Northeast Dry; NEW, Northeast Wet; S, South; SE, Southeast; WA, West Amazon; WC, West-Central.
eEHW, equatorial, hot and wet; EHS, equatorial, hot and semi-wet; THA, tropical, hot and semi-arid; THW, tropical, semi-hot and wet; TMW, tropical, mesothermal, wet; TSW, tropical, semi-hot, wet; TSS, tropical, semi-hot and semi-wet.
