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Volume 12, Number 2—February 2006

Dispatch

Novel Dengue Virus Type 1 from Travelers to Yap State, Micronesia

Yoko Nukui*†, Shigeru Tajima*, Akira Kotaki*, Mikako Ito*, Tomohiko Takasaki*, Kazuhiko Koike†, and Ichiro Kurane*Comments to Author 
Author affiliations: *National Institute of Infectious Diseases, Tokyo, Japan; †University of Tokyo, Tokyo, Japan

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Table 2

Pairwise comparisons of full-length genome and 3´ noncoding region sequences of dengue virus type 1 (DENV-1) strains*

Virus strain % identify of nucleotide
NIID04-27
FGA/89
BR/90
BR/97-111
Abidjan
Mochizuki
S275/90
16007
GZ/80
A88
Cambodia
Djibouti
WestPac74
Full-length genome
NIID04-27 91.5 91.5 91.3 90.9 93.4 91.9 93.1 92.3 96.9 91.7 91.7 95.6
FGA/89 89.5 98.3 97.9 94.5 93.7 93.4 93.5 92.5 92.3 92.0 92.1 93.3
BR/90 89.5 99.4 98.8 94.5 93.9 93.7 93.7 92.7 92.3 92.2 92.0 92.9
BR/97-111 89.3 98.7 99.4 94.4 93.7 93.5 93.5 92.5 92.2 92.1 91.8 92.8
Abidjan 89.7 94.0 93.8 94.2 92.9 92.8 92.9 92.1 92.0 91.7 91.6 92.3
Mochizuki 91.2 94.8 94.7 94.9 93.4 95.0 95.4 96.1 94.6 95.3 95.2 95.1
S275/90 91.2 91.7 91.5 91.9 96.6 94.4 93.8 96.1 93.0 96.4 95.2 93.7
16007 90.8 96.2 95.9 95.7 93.2 97.4 93.4 94.2 94.2 93.7 93.5 94.7
GZ/80 90.2 94.1 93.8 94.4 93.6 97.4 94.4 95.7 93.3 96.7 98.0 93.9
A88 92.5 93.8 93.6 93.8 92.3 96.8 92.9 96.8 95.5 92.7 92.7 97.2
Cambodia 89.9 92.1 92.1 92.1 96.4 94.4 96.9 93.6 95.1 92.8 95.9 93.4
Djibouti 89.5 92.1 91.9 91.9 95.3 95.3 96.9 94.0 95.5 93.2 97.6 93.3
WestPac74 91.4 95.1 94.9 95.1 93.8 93.8 93.2 97.2 95.1 97.2 93.0 93.4
3´ noncoding region

*The percentage nucleotide sequence identities of the complete genomes are shown in the upper right half of the table. The percentage nucleotide sequence identities of the 3´ noncoding region of the genomes are shown in the lower left half of the table. The percentage sequence homologies between NIID04-27 and each of 12 other DENV-1 strains are shown in boldface.

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