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Volume 13, Number 11—November 2007

Dispatch

Newfound Hantavirus in Chinese Mole Shrew, Vietnam

Jin-Won Song*, Hae Ji Kang*, Ki-Joon Song*, Thang T. Truong†‡, Shannon N. Bennett†, Satoru Arai†, Ninh U. Truong‡, and Richard Yanagihara†Comments to Author 
Author affiliations: *Korea University, Seoul, South Korea; †University of Hawaii at Manoa, Honolulu, Hawaii, USA; ‡National Institute of Hygiene and Epidemiology, Hanoi, Vietnam;

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Table 2

Pairwise nucleotide and amino acid sequence analysis of the full-length M segments of Cao Bang virus and other hantaviruses*

Hantavirus CBNV HTNV SEOV SOOV DOBV PUUV PHV TULV SNV ANDV
CBNV TC-3 62.6 62.4 62.5 62.3 58.1 57.3 58.3 58.8 58.0
HTNV 76–118 61.2 71.3 80.6 70.7 58.0 57.9 58.8 57.4 57.6
SEOV 80–39 60.9 77.1 71.1 70.4 58.6 57.5 58.8 56.7 57.2
SOOV SC-1 60.8 91.2 76.6 70.4 57.8 58.1 59.4 58.1 57.4
DOBV Greece 61.7 77.3 77.2 60.8 58.3 57.1 58.0 58.3 57.6
PUUV Sotkamo 52.0 53.8 53.8 54.1 53.4 70.1 71.4 65.5 64.8
PHV PH-1 52.4 54.3 53.6 54.2 53.5 75.6 73.0 65.5 63.6
TULV M5302v 52.9 55.7 54.7 54.8 55.0 78.9 80.4 66.4 64.8
SNV NMH10 54.7 54.7 53.1 55.2 54.1 66.9 67.6 69.2 70.6
ANDV Chile 54.2 54.7 54.1 55.3 54.4 66.8 66.7 67.8 77.9

*Pairwise distances are presented as a triangular matrix, with nucleotide on the top half and amino acid similarities on the bottom half. GenBank accession nos.: Cao Bang virus (CBNV TC-3), EF543526; Hantaan virus (HTNV 76–118), NC_005219; Seoul virus (SEOV 80–39), NC_005237; Soochong virus (SOOV SC-1), AY675353; Dobrava virus (DOBV Greece), NC_005234; Puumala virus (PUUV Sotkamo), NC_005223; Prospect Hill virus (PHV PH-1), X55129; Tula virus (TULV Moravia 5302v), NC_005228; Sin Nombre virus (SNV NMH10), NC_005215; and Andes virus (ANDV Chile-9717869), NC_003467.

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