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Volume 16, Number 1—January 2010

Research

Recombinant Canine Coronaviruses in Dogs, Europe

Nicola DecaroComments to Author , Viviana Mari, Gabriella Elia, Diane D. Addie, Michele Camero, Maria Stella Lucente, Vito Martella, and Canio Buonavoglia
Author affiliations: Faculty of Veterinary Medicine of Bari, Valenzano, Italy (N. Decaro, V. Mari, G. Elia, M. Camero, M.S. Lucente, V. Martella, C. Buonavoglia); Feline Institute Pyrenees, Etchebar, France (D.D. Addie)

Main Article

Table 3

Percent nucleotide identity of representative TGEV-like CCoVs to group-1a CoV reference strains in the 5′ and 3′ ends of the spike gene from dogs from Europe, 2001–2008*

CoV strain GenBank accession no. % Identity
5′ end† 3′ end‡
CCoV-IIb-341/05 EU856361 88.1–99.3 94.7–99.4
CCoV-IIb-174/06 EU856362 86.8–99.0 93.3–97.0
CCoV-IIb-430/07 EU924790 85.9–97.3 92.7–97.0
CCoV-IIb-119/08 EU924791 89.1–99.0 93.7–99.8
CCoV-IIb-UCD1 AF116248 76.6–85.7 NA
TGEV-Purdue NC_002306 76.6–84.4 91.4–93.1
TGEV-TS DQ201447 76.2–84.4 90.8–92.5
TGEV-96-1933 AF104420 74.0–81.8 87.1–88.8
PRCoV-RM4 Z24675 NA 90.2–91.6
PRCoV-86-137004 X60089 NA 90.2–91.6
CCoV-IIa-Insavc-1 D13096 35.4–38.3 92.1–95.3
CCoV-IIa-CB/05 DQ112226 35.1–37.7 93.7–99.0
CCoV-IIa-BGF10 AY342160 34.2–37.5 90.8–94.3
FCoV-II-79-1146 NC_007025 34.0–36.6 90.2–91.6
FCoV-II-79-1683 X80799 34.6–37.5 90.4–91.9
CCoV-I-Elmo/02 AY307020 37.6–40.4 61.8–62.8
CCoV-I-23/03 AY307021 31.8–34.8 60.3–61.2
FCoV-I-KU-2 D32044 37.4–40.8 59.1–60.3
FCoV-I-Black EU186072 36.2–39.3 58.9–61.0
FCoV-I-UCD1 AB088222 38.3–42.7 57.9–58.9

*TGEV, porcine transmissible gastroenteritis virus; CCoV, canine coronavirus; NA, sequence not available.
†Nucleotides 1–305 of the spike gene of reference strain CCoV-IIb-341/05.
‡Nucleotides 3574–4085 of the spike gene of reference strain CCoV-IIb-341/05.

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