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Volume 16, Number 5—May 2010

Dispatch

Unusual Assortment of Segments in 2 Rare Human Rotavirus Genomes

Simona De GraziaComments to Author , Giovanni M. Giammanco, Christiaan A. Potgieter, Jelle Matthijnssens, Krisztián Bányai, Maria A. Platia, Claudia Colomba, and Vito Martella
Author affiliations: University of Palermo, Palermo, Italy (S. De Grazia, G.M. Giammanco, M.A. Platia, C. Colomba); Ondersterpoort Veterinary Institute, Ondersterpoort, South Africa (C.A. Potgieter); Rega Institute for Medical Research, Leuven, Belgium (J. Matthiinssens); Veterinary Medical Research Institute, Budapest, Hungary (K. Bányai); University of Bari, Valenzano, Italy (V. Martella)

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Table 2

Complete genomic constellations of the 2 G3P[9] Italian viruses sequenced together with several human P[14], ruminant, and feline rotaviruses and reference human strains Wa, DS-1, and AU-1*

Strain VP7 VP4 VP6 VP1 VP2 VP3 NSP1 NSP2 NSP3 NSP4 NSP5
Hu/Ita/PA169 G6 P[14] I2 R2 C2 M2 A3 N2 T6 E2 H3
Hu/Hung/Hun5 G6 P[14] I2 R2 C2 M2 A11 N2 T6 E2 H3
Hu/B10925 G6 P[14] I2 R2 C2 M2 A3 N2 T6 E2 H3
Hu/MG6 G6 P[14] I2 R2 C2 M2 A11 N2 T6 E2 H3
Hu/111/05 G6 P[14] I2 R2 C2 M2 A3 N2 T6 E2 H3
Ov/OVR762 G8 P[14] I2 R2 C2 M2 A11 N2 T6 E2 H3
Gu/Arg/Chubut G8 P[14] I2 R5 C2 M2 A3 N2 T6 E2 H3
Bo/RF G6 P[5] I2 R2 C2 M2 A3 N2 T6 E2 H3
Bo/NCDV G6 P[1] I2 R2 C2 M2 ? N2 T6 E2 H3
Hu/Ita/PAI58/96 G3 P[9] I2 R2 C2 M2 A3 N2 T6 E2 H3
Hu/Ita/PAH136/96 G3 P[9] I2 R2 C2 M2 A3 N1 T6 E2 H3
Fe/Cat-2 G3 P[9] I3 R3 C2 M3 A3 N1 T6 E3 H3
Fe/Cat-97 G3 P[3] I3 R3 C2 M3 A9 N2 T3 E3 H6
Ca/CU-1 G3 P[3] I3 R3 C2 M3 A9 N2 T3 E3 H6
Ca/Ro1845 G3 P[3] I3 R3 C2 M3 A9 N2 T3 E3 H6
Ca/K9 G3 P[3] I3 R3 C2 M3 A9 N2 T3 E3 H6
Ca/A79–10 G3 P[3] I3 R3 C2 M3 A9 N2 T3 E3 H6
Hu/HCR3A G3 P[3] I3 R3 C2 M3 A9 N2 T3 E3 H6
Hu/AU-1 G3 P[9] I3 R3 C3 M3 A3 N3 T3 E3 H3
Hu/DS-1 G2 P[4] I2 R2 C2 M2 A2 N2 T2 E2 H2
Hu/Wa G1 P[8] I1 R1 C1 M1 A1 N1 T1 E1 H1

*Gray shading indicates genetic relationships with respect to the G3P[9] Italian viruses, according to the patterns of segregation displayed in the phylogenetic analyses in the Technical Appendix. Boldface indicates complete genomic constellations of the 2 G3P[9] Italian viruses sequenced in this study. VP, structural protein; NSP, nonstructural protein.

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