Volume 17, Number 10—October 2011
Dispatch
Isolation and Phylogenetic Grouping of Equine Encephalosis Virus in Israel
Karin Aharonson-Raz, Amir Steinman, Velizar Bumbarov, Sushila Maan, Narender Singh Maan, Kyriaki Nomikou, Carrie Batten, Christiaan Potgieter, Yuval Gottlieb, Peter Mertens, and Eyal Klement
Table 2
GenBank accession numbers for orbiviruses used for phylogenic analyses of strain isolated from horses in Israel, 2009*
| Virus | Strain | Accession no. |
|
|---|---|---|---|
| Seg-2 | Seg-10 | ||
| EEV-1 (Cascara) | FLD1 | AY115878 | |
| FLD2 | AY115876 | ||
| FLD3 | AY115875 | ||
| FLD4 | AY115877 | ||
| Ref | AY115865 | ||
| Ref† |
AY115864 |
||
| EEV-2 (Gamil) |
Ref |
AY115871 |
|
| EEV-3 (Kaalplaas) | FLD1 | AY115874 | |
| Ref |
HQ630933 |
AY115867 |
|
| EEV-4 (Bryanston) |
Ref |
AY115868 |
|
| EEV-5 (Kyalami) |
Ref |
AY115869 |
|
| EEV-6 (Potchefstroom) | Ref | AY115866 | |
| FLD1 | AY115872 | ||
| FLD2 |
AY115873 |
||
| EEV-7 (N Rand) |
Ref |
AY115870 |
|
| AHSV-2 | AF276700 | ||
| AHSV-4 | AJ007305 | ||
| AHSV-7 |
AJ007306 |
||
| BRDV |
M83197 |
||
| BTV- 2 | AF135224 | ||
| BTV-12 |
AF135227 |
||
| PALV (Chuzan) |
AB018091 |
||
| EHDV-1 | NC_013405.1 | ||
| EHDV-2 |
AM745086.1 |
||
| Israel EEV H5 | Animal H5 | HQ441245 | |
| Israel EEV H3 | Animal H3 (ISR2009/20)‡ | JF495411 | HQ441246 |
| Israel EEV H8 | Animal H8 (ISR2009/21)‡ | JF495412 | HQ441247 |
*Seg, dsRNA genome segment; EEV, equine encephalosis virus; FLD, field strain; ref, reference strain; N Rand, North Rand; AHSV, African horse sickness virus; BRDV, Broadhaven virus; BTV, bluetongue virus; PALV, Palyam virus; EHDV, epizootic hemorrhagic disease virus; H5, H3, H8, horses 5, 3, 8.
†Unknown origin.
‡Isolate numbers for the Orbivirus reference collection (www.reoviridae.org/dsRNA_virus_proteins/ReoID/EEV-isolates.htm).
