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Volume 17, Number 11—November 2011
THEME ISSUE
CHOLERA IN HAITI

Research

Comparative Genomics of Vibrio cholerae from Haiti, Asia, and Africa

Aleisha R. Reimer, Gary Van Domselaar, Steven Stroika, Matthew Walker, Heather Kent, Cheryl Tarr, Deborah Talkington, Lori Rowe, Melissa Olsen-Rasmussen, Michael Frace, Scott A. Sammons, Georges Anicet Dahourou, Jacques Boncy, Anthony M. Smith, Philip Mabon, Aaron Petkau, Morag Graham, Matthew W. Gilmour, Peter Gerner-SmidtComments to Author , and the V. cholerae Outbreak Genomics Task Force
Author affiliations: Author affiliations: Public Health Agency of Canada, Winnipeg, Manitoba, Canada (A.R. Reimer, G. Van Domselaar, M. Walker, H. Kent, P. Mabon, A. Petkau, M. Graham, M.W. Gilmour); Centers for Disease Control and Prevention, Atlanta, Georgia, USA (S. Stroika, C. Tarr, D. Talkington, L. Rowe, M. Olsen-Rasmussen, M. Frace, S. Sammons, P. Gerner-Smidt); Centers for Disease Control and Prevention, Port-au-Prince, Haiti (G.A. Dahourou); Ministry of Public Health and Population, Port-au-Prince (J. Boncy); National Institute for Communicable Diseases, Johannesburg, South Africa (A.M. Smith)

Main Article

Table 2

Next-generation sequence average coverage and number of mapped reads for Vibrio cholerae isolates from Haiti, Asia, and Africa

Isolate No. mapped Illumina reads* Average Illumina coverage* No. 454 aligned reads† Average 454 coverage†
2009V-1046 12,100,798 167.5 288,870 28
2009V-1085 13,679,291 187.8 365,484 33
2009V-1096 14,818,679 205.2 649,798 60
2009V-1116 13,486,955 181.8 264,833 23
2009V-1131 1,370,5972 185.9 273,608 24
2010EL-1749 16,654,195 189.7 735,029 51
2010EL-1786 26,312,006 343.8 216,539 17
2010EL-1792 23,073,959 295.9 239,940 19
2010EL-1798 27,914,201 369.9 270,493 21
2010V-1014 15,247,545 195.5 501,200 44
3500–05 10,962,437 268.6 279,246 27
3546–06 14,625,431 331.0 238,176 22
3569–08 15,920,777 201.4 228,302 18
3582–05 12,181,066 302.0 621,605 62
C6706 15,578,468 349.4 363,226 35
2010EL-1961 9,077,044 229.0 415,643 40
2011EL-1089 10,841,303 263.2 194,828 17
2011EL-1133 12,544,418 283.8 112,039 10
2011EL-1137 11,703,624 285.2 505,482 48
2011EL-2010N 12,178,627 323.5 409,268 41
2011V-1021 11,274,787 282.8 213,312 20
2010EL-2010H 11,366,854 291.4 422,937 40
3554–08 16,149,256 373.9 498,131 45

*Determined by using GAIIe Sequencer; Illumina, San Diego, CA, USA.
†Determined by using 454 Sequencer; 454 Life Sciences, Branford, CT, USA.

Main Article

1Members of the V. cholerae Outbreak Genomics Task Force are Arunmozhi Balajee, Shanna Bolcen, Cheryl A. Bopp, John Besser, Ifeoma Ezeoke, Patricia Fields, Molly Freeman, Lori Gladney, Dhwani Govil, Michael S. Humphrys, Maria Sjölund-Karlsson, Karen H. Keddy, Elizabeth Neuhaus, Michele M. Parsons, Efrain Ribot, Maryann Turnsek, Shaun Tyler, Jean M. Whichard, Anne Whitney, and the authors.

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