Volume 17, Number 4—April 2011
Dispatch
Animal Movement and Establishment of Vaccinia Virus Cantagalo Strain in Amazon Biome, Brazil
Table 2
Nucleotide identity scores obtained for the concatenated alignment of HA, C7L, and K2L genes of Mato Grosso and Rondônia isolates and distinct vaccinia virus strains, Brazil, 2008–2010*
| Strain | VACV-Cop | VACV-Lister | VACV-WR | ARAV | CTGV- MU-07 | CTGV | CTGV-VSD-01 | CTGV-URU-04 | CTGV-URU-06 | CTGV-JP-11 | CTGV-JP-13 | CTGV-ESP-01 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| VACV-Cop | ID | 0.990 | 0.990 | 0.971 | 0.971 | 0.971 | 0.971 | 0.971 | 0.971 | 0.971 | 0.971 | 0.971 |
| VACV-Lister | 0.990 | ID | 0.991 | 0.972 | 0.972 | 0.972 | 0.972 | 0.972 | 0.972 | 0.972 | 0.972 | 0.972 |
| VACV-WR | 0.990 | 0.991 | ID | 0.976 | 0.976 | 0.976 | 0.976 | 0.976 | 0.976 | 0.976 | 0.976 | 0.976 |
| ARAV | 0.971 | 0.972 | 0.976 | ID | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 |
| CTGV-MU-07 | 0.971 | 0.972 | 0.976 | 0.999 | ID | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 |
| CTGV | 0.971 | 0.972 | 0.976 | 0.999 | 0.999 | ID | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 |
| CTGV-VSD-01 | 0.971 | 0.972 | 0.976 | 0.999 | 0.999 | 0.999 | ID | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
| CTGV-URU-04 | 0.971 | 0.972 | 0.976 | 0.999 | 0.999 | 0.999 | 1.000 | ID | 1.000 | 1.000 | 1.000 | 1.000 |
| CTGV-URU-06 | 0.971 | 0.972 | 0.976 | 0.999 | 0.999 | 0.999 | 1.000 | 1.000 | ID | 1.000 | 1.000 | 1.000 |
| CTGV-JP-11 | 0.971 | 0.972 | 0.976 | 0.999 | 0.999 | 0.999 | 1.000 | 1.000 | 1.000 | ID | 1.000 | 1.000 |
| CTGV-JP-13 | 0.971 | 0.972 | 0.976 | 0.999 | 0.999 | 0.999 | 1.000 | 1.000 | 1.000 | 1.000 | ID | 1.000 |
| CTGV-ESP-01 | 0.971 | 0.972 | 0.976 | 0.999 | 0.999 | 0.999 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | ID |
*GenBank accession nos. for vaccinia virus genomes are as follows: VACV-Cop (Copenhagen strain), M35027; VACV-Lister, AY678276; VACV-WR (Western Reserve strain), NC_006998. Individual GenBank accession nos. for HA, C7L and K2L genes of CTGV and CTGV-related viruses are as follows, respectively: ARAV (Araçatuba virus) (3): AY523994, EF051277, EF175987); CTGV isolate MU- 07 (7): FJ545689, FJ545688, FJ545687; CTGV (reference sample) (1): AF229247, EF488959, EU528619; CTGV isolates investigated in this work VSD-01(municipality of Vale de São Domingos, MT, 2008): HQ336388, HQ336394, HQ336400; URU-04 (municipality of Urupá, RO, 2009): HQ336387, HQ336393, HQ336399; URU-06 (municipality of Urupá, RO, 2009): HQ336389, HQ336395, HQ336401; JP-11 (municipality of Ji-Paraná, RO, 2010): HQ336385, HQ336391, HQ336397; JP-13 (municipality of Ji-Paraná, RO, 2010): HQ336384, HQ336390, HQ336396; ESP-01 (municipality of Espigão D’Oeste, RO, 2010): HQ336386, HQ336392, HQ336398. HA, hemagglutinin; VACV, vaccinia virus; CTGV, vaccinia virus CantaIago strain; MT, Mato Grosso State; RO, Rondônia State; ID, identical viruses.
