Volume 17, Number 5—May 2011
Letter
Yersinia pestis DNA Sequences in Late Medieval Skeletal Finds, Bavaria
Table
Alignment of pPCP1 Yersinis pestis modern and ancient sequences
| Source and Y. pestis strain | GenBank accession no. | Sequence, 5′ → 3′ |
|---|---|---|
| Complete sequence | ||
| Y. pestis CO92 plasmid pPCP1 | AL109969.1 | 8488_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTTTTGTACGCACCACTGAA_8547 |
| Y. pestis KIM plasmid pPCP1 | AF053945.1 | 8488_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_8547 |
| Y. pestis biovar Microtus str. 91001 plasmid pPCP1 | AE017046.1 | 8487_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_8546 |
| Y. pestis Nepal516 plasmid pPCP | CP000307.1 | 9650_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_9709 |
| Y. pestis Antiqua plasmid pPCP | CP000310.1 | 9661_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_9720 |
| Y. pestis D182038 plasmid pPCP1 | CP001592.1 | 8486_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_8545 |
| Y. pestis Z176003 plasmid pPCP1 |
CP001596.1 |
8487_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_8546 |
| Modern isolate | ||
| 103813 Y. pestis Nairobi rattus Antiqua | HQ542863 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| 103814 Y. pestis JHUPRI Antiqua | HQ542864 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| 103815 Y. pestis 14–47 Medievalis | HQ542865 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| 103817 Y. pestis 5G5 Medievalis | HQ542866 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| 103818 Y. pestis 5F1 Medievalis | HQ542867 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| 103819 Y. pestis 6B4 Medievalis | HQ542868 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| 103820 Y. pestis 8B7 Medievalis | HQ542869 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| 103821 Y. pestis 9F11 Medievalis | HQ542870 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| 103822 Y. pestis 6/69M Orientalis | HQ542871 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| 103823 Y. pestis EV-76 Orientalis | HQ542872 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCAC_114 |
| 103824 Y. pestis algeria 1 Orientalis | HQ542873 | 64_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAA_123 |
| 103825 Y. pestis algeria 2 Orientalis |
HQ542874 |
61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| Ancient strain detected from teeth | ||
| Tooth no. 107 (excavated from Lariey site, France, 17th century) | HQ542875 | 62_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAATGC_123 |
| Tooth no. 515 (excavated from Venice site, Italy, 14th–16th centuries) | HQ542876 | 60_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAATGC_121 |
| Tooth no.1183 (excavated from Bondy site, France, 11th–15th centuries) | HQ542877 | 62_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_121 |
| Tooth no. 1184 (excavated from Bondy site, France, 11th–15th centuries) | HQ542878 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_121 |
| Tooth no. 1190 (excavated from Bondy site, France, 11th–15th centuries) | HQ542879 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| Tooth no. 254 (excavated from Venice site, Italy, 14th–16th centuries) | HQ542880 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
| Tooth no. 1180 (excavated from Bondy site, France, 11th–15th centuries) | HQ542881 | 61_TATATTTTCAAGAAAAGCTGGCTATTTAACATAACGGCAATTT..GTACGCACCACTGAAAT_120 |
