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Volume 17, Number 8—August 2011

Dispatch

Atypical Pestivirus and Severe Respiratory Disease in Calves, Europe

Nicola DecaroComments to Author , Maria Stella Lucente, Viviana Mari, Francesco Cirone, Paolo Cordioli, Michele Camero, Rossana Sciarretta, Michele Losurdo, Eleonora Lorusso, and Canio Buonavoglia
Author affiliations: Author affiliations: Faculty of Veterinary Medicine of Bari, Valenzano, Bari, Italy (N. Decaro, M.S. Lucente, V. Mari, F. Cirone, M. Camero, R. Sciarretta, M. Losurdo, E. Lorusso, C. Buonavoglia); Istituto Zooprofilattico Sperimentale di Lombardia ed Emilia Romagna, Brescia, Italy (P. Cordioli)

Main Article

Table

Nucleotide identity of HoBi-like pestivirus strain Italy-1/10-1 with reference pestiviruses in different genomic regions*

Pestivirus species and strain GenBank accession no. Nucleotide identity, %
Full-length genome E2 5′ UTR Npro
HoBi-like pestivirus
Th/04_KhonKaen FJ040215 90.0 87.7 92.3 89.4
D32/00_HoBi AY604725 (E2); AY489116 (5′ UTR); AY735486 (Npro) NA 94.2 98.3 95.2
CH-KaHo/cont
EU385605 (E2); AY895011 (Npro)
NA
93.4
NA
95.2
Border disease virus
H2121 (Chamois-1) GU270877 66.7 58.1 61.8 64.6
Gifhorn GQ902940 66.7 58.2 65.5 64.2
X818 NC_003679 66.9 59.3 60.7 66.2
Reindeer
AF144618
66.3
58.6
65.0
63.2
Classical swine fever virus
Brescia X AY578687 66.9 58.5 66.6 66.6
HCLV AF531433 66.5 59.0 65.5 65.4
Brescia AF091661 66.8 59.0 66.1 65.4
Alfort-A19 U90951 66.8 59.0 66.1 65.8
Shimen/HVRI AY775178 66.8 59.2 66.6 67.0
Riems
AY259122
66.4
58.7
65.5
65.2
Pestivirus of giraffe, H138
AF144617
65.2
58.0
72.8
64.2
Bovine viral diarrhea virus type 1
ILLNC U86600 66.3 60.9 69.8 64.0
ZM-95 AF526381 66.2 62.1 65.7 63.6
Oregon-C24V AF091605 66.4 61.1 68.8 66.2
CP7-5A AF220247 66.4 62.1 68.2 66.0
SD1 M96751 66.3 60.1 68.8 66.2
Singer_Arg DQ088995 66.5 61.4 69.3 65.0
KE9 EF101530 67.0 61.4 70.4 65.8
NADL M31182 65.3 62.0 69.3 66.2
VEDEVAC
AJ585412
66.4
61.3
70.9
66.2
Bovine viral diarrhea virus type 2
JZ05-1 GQ888686 67.4 59.5 75.0 63.8
New York’93 AF502399 67.1 58.7 74.4 65.0
XJ-04 FJ527854 67.1 59.3 74.4 64.2
C413 NC_002032 67.1 58.5 74.4 63.8
Hokudai Lab/09 AB567658 67.2 59.3 72.8 65.2

*UTR, untranslated region; NA, sequence not available.

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