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Volume 18, Number 4—April 2012

Dispatch

Characterization of Mycobacterium orygis as M. tuberculosis Complex Subspecies

Jakko van IngenComments to Author , Zeaur Rahim, Arnout Mulder, Martin J. Boeree, Roxane Simeone, Roland Brosch, and Dick van Soolingen
Author affiliations: Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands (J. van Ingen, M.J. Boeree, D. van Soolingen); International Center for Diarrheal Disease Research, Bangladesh, Dhaka, Bangladesh (Z. Rahim); National Institute for Public Health and the Environment, Bilthoven, the Netherlands (A. Mulder, D. van Soolingen); Institut Pasteur, Paris, France (R. Simeone, R. Brosch)

Main Article

Table A1

Twenty-four locus variable number tandem repeat typing results in characterization of Mycobacterium orygis as M. tuberculosis complex subspecies*

Strain Variable number tandem repeat locus
580 2996 802 960 1644 3192 424 577 2165 2401 3690 4156 2163b 1955 4052 154 2531 4348 2059 2687 3007 2347 2461 3171
17263 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
17297 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
17783 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
17786 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
17788 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
17789 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
94–931 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
94–988 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
95–114 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
97–176 3 4 3 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
97–2150 3 4 2 9 4 4 2 6 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
00–1215 3 4 2 7 4 3 2 5 3 4 4 3 x 3 2 2 4 2 1 1 3 3 2 3
01–2263 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
02–658 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
03–1265 3 4 2 7 4 3 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
07–775 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
07–1275 3 4 2 7 4 4 2 5 x 5 4 3 x 3 2 2 4 2 1 1 3 3 2 3
08–482 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
08–564 3 4 2 7 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
10–1561 3 4 2 6 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3
10–1563 3 4 2 6 4 4 2 5 x 4 4 3 x 3 2 2 4 2 2 1 3 3 2 3

*x, unamplifiable. Boldface indicates deviations from the most frequently observed number of repeats.

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