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Volume 19, Number 11—November 2013

Dispatch

Evidence of Vaccine-related Reassortment of Rotavirus, Brazil, 2008–2010

Tatiana Lundgren RoseComments to Author , Marcelle Figueira Marques da Silva1, Mariela Martinéz Goméz1, Hugo Reis Resque, Maria Yury Travassos Ichihara, Eduardo de Mello Volotão, and José Paulo Gagliardi Leite
Author affiliations: Oswaldo Cruz Institute, Rio de Janeiro, Brazil. (T.L. Rose, M.F.M. Silva, M.M. Gomez, H.R. Resque, E. M. Volotão, J.P.G. Leite); Federal University of Bahia, Salvador, Bahia, Brazil (M.Y.T. Ichihara)

Main Article

Table 2

Nucleotide similarity values when comparing the Brazilian G1P[8] samples with the Rotarix strain gene segments and genotype constellation of selected human group A rotaviruses*

Protein encoded by genes†
Strain names‡ Genotype constellation VP7 VP4 VP6 VP1 VP2 VP3 NSP1 NSP2 NSP3 NSP4 NSP5
SE15901–09 Vaccine G1
100% P[8]
100% I1
100% R1
100% C1
100% M1
100% A1
100% N1
100% T1
100% E1
100% H1
100%
MA19006–10 Vaccine G1
100% P[8]
99% I1
99% R1
99% C1
98% M1
99% A1
98% N1
100% T1
100% E1
99% H1
98%
BA19391–10 Vaccine G1
100% P[8]
99% I1
100% R1
99% C1
98% M1
100% A1
100% N1
100% T1
100% E1
99,6% H1
100%
ES15221–08 Wa-like (ES) G1
94% P[8]
90% I1
90% R1
100% C1
90% M1
93% A1
92% N1
91% T1
97% E1
92% H1
92%
SE16800–09 Wa-like (SE) G1
94% P[8]
92% I1
89% R1
97% C1
90% M1
96% A1
92% N1
88% T1
98% E1
98% H1
92%
PE17888–09 Wa-like (PE) G1
94% P[8]
92% I1
90% R1
94% C1
91% M1
93% A1
93% N1
90% T1
97% E1
94% H1
93%
MA19013–10 Wa-like (MA) G1
95% P[8]
93% I1
92% R1
95% C1
92% M1
95% A1
94% N1
92% T1
97% E1
94% H1
93%
MA19030–10 Wa/AU-1
reassortant G1
93% P[8]
91% X R1
93% X M1
94% A1
93% N1
89% T3
76% E1
92% H1
93%
Wa Wa-like G1 P[8] I1 R1 C1 M1 A1 N1 T1 E1 H1
DS-1 DS-1-like G2 P[4] I2 R2 C2 M2 A2 N2 T2 E2 H2
AK26 Wa/DS-1 reassortant G2 P[4] I2 R2 C2 M2 A2 N1 T2 E2 H2
6809 Wa/DS-1 reassortant G8 P[6] I2 R1 C1 M1 A1 N1 T1 E1 H1
Matlab13 Wa/DS-1 reassortant G12 P[6 I1 R1 C1 M1 A1 T2 T1 E1 H1
Mani-253 Wa/DS-1 reassortant G4 P[4] I1 R1 C1 M2 A8 N1 T1 E1 H1
AU-1 AU-1-like G3 P[9] I3 R3 C3 M3 A3 N3 T3 E3 H3
T152 AU-1-like G12 P[9] I3 R3 C3 M3 A12 N3 T3 E3 H6
K8 Wa/AU-1 reassortant G1 P[9] I1 R3 C3 M3 A1 N1 T3 E3 H3
Mani-265 DS-1/AU-1 reassortant G10 P[6] I2 R2 C2 M2 A3 N2 T7 E2 H2

*Wa-like, DS-1-like, AU-like genotypes are shown in green, red, and orange, respectively, and the P[6] genotype is shown in blue; X, indeterminate genotypes; –, no data.
†One sample for each group was chosen as representative and the average was shown.
‡Prefixes represent origins of circulating strains in Brazil: SE, Sergipe; BA, Bahia; MA, Maranhão; ES, Espirito Santo; PE, Pernambuco.

Main Article

1These authors contributed equally to this article.

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