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Volume 19, Number 8—August 2013
Research

Aichi Virus in Sewage and Surface Water, the Netherlands

Willemijn J. LodderComments to Author , Saskia A. Rutjes, Katsuhisa Takumi, and Ana Maria de Roda Husman
Author affiliations: National Institute of Public Health and the Environment (RIVM), Bilthoven, the Netherlands (W.J. Lodder, S.A. Rutjes, K. Takumi, A.M. de Roda Husman); Utrecht University, Utrecht, the Netherlands (A.M. de Roda Husman).

Main Article

Figure 3

Phylogenetic relationships and genetic diversity over time for 166 sequences of Aichi virus genotype B strains collected in the Netherlands. A) Maximum-clade credibility tree was generated by the Bayesian Markov chain Monte Carlo method in BEAST (28), based on a multiple alignment of nucleotide sequences (481-nt) of the viral protein 1 region. The tree is rooted to the most recent common ancestor, visualized in FigTree (http://tree.bio.ed.ac.uk/software/figtree/), and plotted on a temporal y-axi

Figure 3. . . Phylogenetic relationships and genetic diversity over time for 166 sequences of Aichi virus genotype B strains collected in the Netherlands. A) Maximum-clade credibility tree was generated by the Bayesian Markov chain Monte Carlo method in BEAST (28), based on a multiple alignment of nucleotide sequences (481-nt) of the viral protein 1 region. The tree is rooted to the most recent common ancestor, visualized in FigTree (http://tree.bio.ed.ac.uk/software/figtree/), and plotted on a temporal y-axis scale using the sampling dates. Aichi virus strains from the Netherlands isolated from sewage (red) and surface waters (blue) are indicated. Clusters of sequences of the same sample are represented by triangles (a collapsed branch), and the number of isolates in each triangle is shown in parentheses. B) Bayesian skyline plot obtained by analyzing different Aichi virus sequences sampled at different times. The results are a relative measure for genetic diversity through time. The line represents the median, and the shaded area represents the 95% highest posterior density of the number of isolates.

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Page created: July 19, 2013
Page updated: July 19, 2013
Page reviewed: July 19, 2013
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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