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Volume 8, Number 8—August 2002

Research

Genetic Characterization of Hantaviruses Transmitted by the Korean Field Mouse (Apodemus peninsulae), Far East Russia

Kumari Lokugamage*, Hiroaki Kariwa*Comments to Author , Daisuke Hayasaka*, Bai Zhong Cui*, Takuya Iwasaki†, Nandadeva Lokugamage*, Leonid I. Ivanov‡, Vladimir I. Volkov‡, Vladimir A. Demenev§, Raisa Slonova¶, Galina Kompanets¶, Tatyana Kushnaryova¶, Takeshi Kurata†, Kenji Maeda*, Koichi Araki*, Tetsuya Mizutani*, Kumiko Yoshimatsu#, Jiro Arikawa#, and Ikuo Takashima*
Author affiliations: *Hokkaido University, Sapporo, Japan; †National Institute of Infectious Diseases, Tokyo, Japan; ‡Plague Control Station, Khabarovsk, Russia; §Far Eastern Medical Association, Khabarovsk, Russia; ¶Russian Academy of Medical Sciences, Vladivostok, Russia; #Hokkaido University School of Medicine, Sapporo, Japan;

Main Article

Table 2

Hantavirus sequences used in this studya

Virus type Strain Source Country
 Accession nos.
 References
Region Location M S
HTNV
SL/AP61/1999 Apodemus peninsulae Far East Russia Solovey AB071185 AB071183 This report
SL/AP63/1999 A.peninsulae Far East Russia Solovey AB071186 AB071184 This report
PRI/H1/2000 Human Primorye Cavalerovo AB071187 —b This report
PRI/H2/2000 Human Primorye Cavalerovo AB071188 — This report
AMR/680 A.peninsulae Far East Russia Khabarvosk AF332571 — 11
AMR/1166 A.peninsulae Far East Russia Khabarvosk AF332569 — 11
AMR/1169 A.peninsulae Far East Russia Khabarvosk AF332570 — 11
AMR/4234 Human Far East Russia Amursk AF172422 — 10
AMR/4309 Human Far East Russia Amursk AF172423 — 10
AMR/4313 Human Far East Russia Korphovsky AF172424 — 10
H8205 Human China — AB030232 — —
HTNV261 — China Heilongjiang — AF252259 —
Z10 Human China Zhejiang AB027076 AB027108 12
Chen4 Human China Anhui — AB027101 12
Maaji1 A. agrarius Korea — — AF321094 Lee PW c
Maaji-2 Human Korea — — AF321095 Lee PW c
HTN 76-118 A. agrarius South Korea — M14627 M14626 13,14
Q32 — China Guizhou — AB027097 12
HV114 A. agrarius China Hubei L08753 AB027110 12,15
A9 A. agrarius China Jiangsu AF035831 — 16
Hojo Human South Korea — D00376 — 17
FE/7866 Human Far East Russia Razdolnoye AF172439 — 10
NC167 Niviventer confucianus China Anhui AB027115 AB027523 12
H3 Human China Hubei — — 18
H5 Human China Heilongjiang — — 18
A3 A. agrarius. China Zhejiang AB027055 — 12
B78 Human China Shandong AB027056 AB027093 12
Q36 A. agrarius China Guizhou AB027057 AB027094 12
Q7 A. agrarius China Guizhou AB02058 AB027095 12
Q20 A. agrarius China Guizhou AB027059 AB027096 12
Niongxia-A A. agrarius China Niongxia AB027060 — 12
Q10 A. agrarius China Guizhou AB027062 AB027098 12
A16 A. agrarius China Sanxi AB027063 AB027099 12
Q37 A. agrarius China Guizhou AB027064 AB027100 12
Q33 A. agrarius China Guizhou AB027065 AB027102 12
Bao9 A. agrarius China Heilongjiang AB027066 AB027103 12
Jiang13 A. agrarius China Heilongjiang AB027067 AB027104 12
Bao14 A. agrarius China Heilongjiang AB027068 AB027105 12
Bao10 A. agrarius China Heilongjiang AB027069 AB027106 12
Lee Human South Korea — D00377 — 17
62HTNV — — — AB027070 — 12
6B — — — AB027071 — 12
Vaccine — — — AB027072 — 12
H2 — North Korea — AB027073 AB027107 12
HN26-L A. agrarius China Hainan AB027074 — 12
Luyao Human China Shandong — AB027109 12
B659 Human China Shandong S72339 — 18
Hu Human China Hubei AB027077 AB027111 12
Q83 — — Guizhou AB027078 — 12
B256 — — — AB027079 AB027112 12
Thailand Bandicota indica Thailand — L08756 — —
Topografov Lemmus sibericus Far East Russia Siberia AJ011647 — 9
SEOV
L99 Rattus losea China Jiangxi AF035833 AF288299 —
SR11 R. norvegicus Japan Sapporo M34882 M34881 19
Gou3 R. rattus China Zhejiang AB027521 AB027522 12
NM39 R. norvegicus China Neimeng AB027080 — 12
HB55 Human China Henan AF035832 — 17
Wan Human China Jiangsu AB027081 — 12
J12 Human China Jieling AB027082 — 12
Henan94 R. norvegicus China Henan AB027083 — 12
Shanxi — — — AB027084 — 12
HN71-L R. norvegicus China Hainan AB027085 — 12
Guang199 — — — AB027086 — 12
Beijing-Rn R. norvegicus China Beijing AB027087 — 12
c3 Human China Hebei AB027088 — 12
Hebei4 Cricetulus barabensis China Hebei AB027090 — 12
SD227 — China Shangdong AB027091 — 12
SD10 R. norvegicus China Shangdong AB027092 — 12
Hbei1 Human China Hubei S72343 — 17
Seoul R. norvegicus South Korea — S47716 — 20
Tchoupitoulas R. norvegicus North America — U00473 — 21
B-1 R. norvegicus Japan — X53861 — 22
Girard Point R. norvegicus North America — U00464 — —
DOBV
DOB/SLOV A. flavicollis Slovenia — L33685 L41916 23
DOB/SAA A. agrarius Estonia — AJ009774 AJ009773 4
SNV SNV Peromyscus maniculatus North America — L25783 L25784 24
PUUV PUU/Sot Clethrionomys glareolus Finland — X61034 — 25
Kamiiso C. rufocanus Japan Kamiiso AB011631 — 8
KHAB Khabarovsk Microtis fortis Far East Russia Khabarvosk AJ011648 — 9

aAbbreviations used: HTNV and HTN, Haantan virus; SL, Solovey; PRI, Primorye; AMR, Amur; SEOV, Seoul virus; DOB and DOBV, Dobrava-Belgrade virus; SLOV, Slovenia; SAA, Saarema; SNV, Sin Nombre virus; PUUV, Puumala virus; and KHAB, Khabarovsk virus.
b —, not reported/not used in this study.
cPers. comm.

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