Volume 8, Number 8—August 2002
Research
Genetic Characterization of Hantaviruses Transmitted by the Korean Field Mouse (Apodemus peninsulae), Far East Russia
Kumari Lokugamage*, Hiroaki Kariwa*
, Daisuke Hayasaka*, Bai Zhong Cui*, Takuya Iwasaki†, Nandadeva Lokugamage*, Leonid I. Ivanov‡, Vladimir I. Volkov‡, Vladimir A. Demenev§, Raisa Slonova¶, Galina Kompanets¶, Tatyana Kushnaryova¶, Takeshi Kurata†, Kenji Maeda*, Koichi Araki*, Tetsuya Mizutani*, Kumiko Yoshimatsu#, Jiro Arikawa#, and Ikuo Takashima*
, Daisuke Hayasaka*, Bai Zhong Cui*, Takuya Iwasaki†, Nandadeva Lokugamage*, Leonid I. Ivanov‡, Vladimir I. Volkov‡, Vladimir A. Demenev§, Raisa Slonova¶, Galina Kompanets¶, Tatyana Kushnaryova¶, Takeshi Kurata†, Kenji Maeda*, Koichi Araki*, Tetsuya Mizutani*, Kumiko Yoshimatsu#, Jiro Arikawa#, and Ikuo Takashima*Table 6
Comparison of nucleotide (bases 2737–2969)a and amino acid of M genome between those from Primorye patients, Apodemus peninsulae, and other hantaviruses
| Nucleotide and amino acid identities % b |
||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SL/ AP61 | SL/ AP63 | AMR/ 1169 | PRI/ H1 | PRI/ H2 | H8205 | AMR/ 4313 | HV 114 | A9 | HTNV 76-118 | Hojo | FE | NC167 | DOB/ Slo | SR- 11 | PUU | |
| SL/AP61c | 99.5 | 97.8 | 96.1 | 98.2 | 94.8 | 94.3 | 86.2 | 85.7 | 84.4 | 82.7 | 82.7 | 79.3 | 79.3 | 79.7 | 60.3 | |
| SL/AP63 | 100 | 97.8 | 92.2 | 94.3 | 94.8 | 94.3 | 85.7 | 85.3 | 84.0 | 82.3 | 83.1 | 78.8 | 80.1 | 81.4 | 60.7 | |
| AMR/1169 | 94.8 | 94.8 | 96.5 | 98.7 | 95.6 | 95.6 | 86.6 | 86.2 | 84.9 | 83.1 | 81.4 | 79.7 | 80.1 | 79.3 | 60.3 | |
| PRI/H1 | 100 | 100 | 94.8 | 96.9 | 93.5 | 92.2 | 84.0 | 83.6 | 83.1 | 82.3 | 80.6 | 79.3 | 78.8 | 79.3 | 60.3 | |
| PRI/H2 | 98.7 | 98.7 | 93.5 | 98.7 | 94.8 | 94.3 | 85.7 | 85.3 | 84.0 | 82.3 | 81.4 | 78.8 | 79.3 | 78.8 | 59.4 | |
| H8205 | 100 | 100 | 94.8 | 100 | 98.7 | 91.3 | 83.6 | 83.1 | 85.3 | 84.9 | 80.6 | 77.1 | 79.3 | 77.1 | 60.7 | |
| AMR/4313 | 98.7 | 98.7 | 93.4 | 98.7 | 97.4 | 98.7 | 85.7 | 85.3 | 83.6 | 81.8 | 82.7 | 78.0 | 78.0 | 78.8 | 59.9 | |
| HV114 | 93.5 | 93.5 | 88.3 | 93.5 | 92.2 | 93.5 | 92.2 | 99.5 | 86.6 | 84.4 | 87.9 | 78.4 | 75.8 | 83.1 | 51.9 | |
| A9 | 93.5 | 93.5 | 88.3 | 93.5 | 92.2 | 93.5 | 92.2 | 98.9 | 86.2 | 84.0 | 87.5 | 78.0 | 75.4 | 81.8 | 50.6 | |
| HTNV76118 | 94.8 | 94.8 | 89.6 | 94.8 | 93.5 | 94.8 | 93.5 | 97.4 | 96.1 | 94.6 | 88.7 | 79.7 | 78.4 | 76.7 | 59.9 | |
| Hojo | 94.8 | 94.8 | 89.6 | 94.8 | 93.5 | 94.8 | 93.5 | 97.4 | 96.1 | 100 | 87.9 | 78.0 | 78.8 | 76.7 | 51.5 | |
| FE | 92.2 | 92.2 | 87.0 | 92.2 | 90.9 | 92.2 | 90.9 | 87.9 | 87.5 | 97.4 | 98.7 | 75.8 | 73.7 | 78.4 | 59.9 | |
| NC167 | 86.8 | 86.8 | 80.5 | 86.8 | 85.5 | 86.8 | 85.5 | 89.5 | 88.2 | 90.8 | 90.8 | 88.2 | 75.4 | 77.5 | 49.3 | |
| DOB/Slo | 88.3 | 88.3 | 83.1 | 88.3 | 87.0 | 88.3 | 87.0 | 88.3 | 87.0 | 87.0 | 87.0 | 84.4 | 81.6 | 75.0 | 59.9 | |
| SR11 | 83.1 | 83.1 | 79.2 | 83.1 | 81.8 | 83.1 | 81.8 | 83.1 | 81.8 | 81.8 | 81.8 | 83.1 | 80.3 | 80.5 | 56.0 | |
| PUUV | 53.2 | 53.2 | 53.2 | 53.2 | 51.9 | 53.2 | 51.9 | 62.9 | 62.5 | 51.9 | 61.6 | 53.2 | 61.6 | 49.4 | 61.2 | |
aBased on Haantan 76-118.
bValues above the diagonal and the right show nucleotide identities; those below the diagonal and to the left show amino acid identities.
cValues in bold show the close identities between those sequences. Abbreviations used: SL, Solovey; AMR, Amur; PRI, Primorye; HTNV, Haantan virus; FE, Far East virus; DOB, Dobrova; Slo, Slovenia; PUUV, Puumala virus.
