Coccidioidomycosis Cases at a Regional Referral Center, West Texas, USA, 2013–2019

We scanned medical records and identified patients diagnosed with coccidiomycosis during January 1, 2013–December 1, 2019, based on International Classification of Diseases, 9th Revision (ICD-9), and International Classification of Diseases, 10th Revision (ICD-10), codes 114 and B38. To be included, case-patients had to be 9–89 years of age, have a confirmed diagnosis of coccidioidomycosis, and have been diagnosed or treated at the regional referral center during the surveillance period. We separately calculated another set of demographics and risk factors at a regional hospital in another West Texas county (Appendix). We confirmed diagnoses based on provider notes or laboratory results.

We included signs and symptoms considered to be associated with coccidioidomycosis only if present at the time of diagnosis. The list of associated factors was not meant to be exhaustive, and certain risk factors (such as dust exposure) may be relevant only in areas where coccidioidomycosis is endemic. We obtained medical and social history directly from patient charts where possible. We identified at-risk occupations based on National Institute for Occupational Safety & Health status (4). We considered smoking status and travel history associated factors only if specified as such in case records. We defined immunocompromised status as having received chemotherapy or immunosuppressive medication within 3 months of coccidioidomycosis diagnosis, having been diagnosed with immunosuppressive disease, or having a CD4 count <200 cells/mm³. We defined chronic lung disease as having asthma, chronic obstructive pulmonary disorder, pneumonitis, cystic fibrosis, or other medically recognized chronic lung pathology. We defined previous lifetime exposure to an endemic site as travel to or residence in Arizona, California, New Mexico, Nevada, Utah, Mexico, or Texas (if living outside the state at time of diagnosis), all of which are coccidioidomycosis-endemic states.

We determined coccidioidomycosis pathology on the basis of information in pathology or radiology reports or physician notes; for cause of death, coccidioidomycosis had to be specified as the cause of death in a death certificate or other medical record. We recorded any data fields for which we could not verify information from medical records as unknown. We occasionally excluded patient demographic data if records were unclear, missing, or contained contradictory information. We obtained Texas population data used in the model from the US Census Bureau (https://www.census.gov) and calculated workforce percentages using 2020 Census data. We performed statistical analysis using R software (https://www.r-project.org). We ran univariate logistic regression models to explore the association between variables of interest (sex, race and ethnicity, age, and smoking history) and outcomes (multiple risk factors, central nervous system [CNS] pathology).

We identified 73 patients with coccidioidomycosis (Table). Fluctuations in annual case totals were consistent with those previously observed in annual coccidioidomycosis counts (Figure) and were possibly related to environmental and climate factors (5). Among case-patients, 3 died from coccidioidomycosis. The most frequent at-risk occupations were oil and gas extraction (8/73, 11.0%) and agriculture (3/73, 4.1%), both industries common in West Texas and eastern New Mexico. Coccidioidomycosis has been associated with professions that involved dust exposure and outbreaks have been associated with exposure at job sites. One study found that more than half of the outbreaks they examined over 75 years involved occupational exposures (6). However, because limited reports of occupation-related cases of coccidioidomycosis exist, in part because standardized surveillance records do not include occupation, determining if the level of association is typical or accurate is difficult. Of note, Texas has the largest oil and gas workforce in the United States (334,400 workers in direct extraction and support services in 2019) (7) and one of the largest agricultural workforces (143,763 hired farm laborers in 2017) (8). The case rates we observed for the oil and gas extraction (11.0%) and agricultural (4.1%) industries were much higher than our calculated estimates for those industries in Texas, 1.15% for direct oil and gas extraction and 0.49% for agricultural farm laborers. These data support previous observations regarding these occupations as being high risk for coccidioidomycosis (4).

Most (55/73, 75.3%) patients were 20–59 years of age. Given that older patients may be more susceptible to severe illness and more likely to have comorbidities, surprisingly few (12/73, 16.4%) were >60 years of age; surveillance data have typically shown a larger proportion of patients >60 years of age (5). The reasons for this discrepancy are unclear but may include differences in age demographics between regions. As expected, most cases manifested with pulmonary disease, although 14% had a CNS pathology, including meningitis. A study of US Department of Veterans Affairs patients in the 1950s documented a meningitis rate of 3.5% associated with coccidiomycosis (9).

Of associated factors, we most frequently observed a smoking history (32/71, 45.1%) and diabetes (25/72, 34.7%). Smoking rate was consistent with the 49.1% observed in one study (10) and lower than the 72.0% observed in another (11). The frequency of diabetes we observed supports surveillance data linking diabetes and coccidioidomycosis (12,13). Thus, the association of diabetes with coccidioidomycosis may be important for populations with high diabetes prevalence and an important consideration for clinicians treating diabetic patients in Coccidioides–endemic regions. Smoking, sex, and race and ethnicity were not significant predictors of CNS pathology. Regional demographics, such as socioeconomic status, may play a role in access to care and diagnosis and treatment of coccidioidomycosis (14), especially in rural regions such as West Texas and eastern New Mexico, where patients may live several hundred miles from facilities providing advanced levels of care. Furthermore, limited access to infectious disease specialists suggests the possibility of delayed diagnoses and increased case severity in this region. Indeed, a 2017 report showed West Texas and parts of eastern New Mexico averaged <1 infectious disease physician/100,000 persons (15). Of the patients known to be residing in Texas at the time of diagnosis, 18/39 (46.2%) lived >50 miles from the referral center, which suggests the importance of access to higher levels of care for coccidioidomycosis diagnosis and treatment.

We anticipate the need for future studies to provide a longitudinal assessment of coccidioidomycosis in Texas. Retrospective reviews from medical records, although useful, are limited in their ability to thoroughly survey the prevalence of a disease such as coccidioidomycosis within a particular region, suggesting the need for more routine surveillance such as statewide mandatory reporting. Our findings also suggest that access to higher levels of care should be considered when treating populations at risk for coccidioidomycosis.