Volume 17, Number 3—March 2011
Molecular Epidemiology of Mycobacterium tuberculosis, Buenos Aires, Argentina
To analyze the molecular epidemiology of Mycobacterium tuberculosis strains at a hospital in Buenos Aires, Argentina, and mutations related to multidrug-resistant and extensively drug-resistant tuberculosis, we conducted a prospective case–control study. Our findings reinforce the value of incorporating already standardized molecular methods for rapidly detecting resistance.
During the 1990s, an outbreak of multidrug-resistant (MDR) tuberculosis (TB) in HIV-positive patients occurred at the Muñiz Hospital in Buenos Aires, Argentina (1). Molecular analysis showed that a member of Haarlem2 family of Mycobacterium tuberculosis was responsible (1).
We conducted a prospective case-control study during June 1, 2006–April 30, 2007, at this 300-bed public hospital, which reports ≈40% of new TB cases in the city (2). Our primary aims were to analyze the molecular epidemiology of M. tuberculosis strains circulating at the hospital and the mutations related to MDR TB and extensively drug-resistant TB.
The strains were isolated and tested for antimicrobial drug susceptibility according to the proportion method (3) at the Muñiz Hospital Mycobacteria Laboratory. A proportion were tested for reserve drugs at the Health Protection Agency National Mycobacteria Reference Unit Laboratory, London, UK. DNA was extracted from cultures at this UK laboratory; spoligotyping was performed according to the manufacturer’s instructions (Isogen Life Science, IJsselstein, the Netherlands); and data were analyzed with SPOTCLUST (http://cgi2.cs.rpi.edu/~bennek/SPOTCLUST.html).
We performed 15-locus variable number tandem repeat (VNTR) using a CEQ 8000 Genetic Analysis System (Beckman Coulter, Inc., Fullerton, CA, USA) (4). Cluster analysis was performed by using Bionumerics software (Applied Maths, St-Martens-Latem, Belgium). Strains lacking a unique pattern were subjected to further analysis with an expanded set of VNTR loci (5).
In-house macroarrays were performed on MDR TB strains (6) to identify mutations in the katG and the inhA genes. Two regions of the rpoB gene of MDR TB strains were sequenced with the CEQ 8000 Genetic Analysis System. Statistical analyses were conducted by using χ2 and Fisher exact tests.
After we excluded duplicates, treatment follow-ups, and strains with susceptibility patterns other than MDR TB or susceptibility to all drugs tested, 881 strains were susceptible to all drugs tested. Patients with a minimum dataset (name, sex, date of birth or age, TB presentation [i.e., pulmonary or nonpulmonary], and at least 1 sign or symptom describing TB illness and treatment received) were enrolled: 57 of 62 hospitalized patients with MDR TB cultures (Table) and 100 fully susceptible unmatched inpatient controls, for a total of 157 patients. This convenience sample (Figure 1) included only admitted patients because of the difficulty of obtaining clinical information about outpatients.
The most common spoligofamilies were T1 (18%), Haarlem 1 (10%), 2 (16%), and 3 (11%), LAM 3 (10%), and LAM 9 (13%). Initial 15-loci VNTR analysis showed 73 strains with unique patterns. Further analysis using 7-loci VNTR was performed on those that did not have a unique pattern. Twenty-six isolates remained clustered (Figure 2).
Of the 57 MDR TB strains, 43 had a mutation in the katG315 locus, and 6 had a mutation in the inhA region. No strain had mutations in both genes. In 8 strains, resistance to isoniazid was not mediated by mutations in any of them.
Mutations in the rpoB region were detected by sequencing. The most frequent mutation was the S531L. Mutations at >1 site were rare. In 3 cases, we found 2 point mutations in the same codon. Only 1 MDR TB strain had no mutation in the rpoB segment sequenced; it also had a katG and inhA wild type. Complete susceptibility profile for all 57 MDR TB strains is available in the online Appendix Table (www.cdc.gov/EID/content/17/3/528-appT.htm).
In addition, we detected 5 extensively drug-resistant TB strains. None were clustered by 22-loci VNTR typing.
Spoligotyping identified predominance of the Haarlem family among the MDR TB cases (family responsible for the 1990s [
The MDR TB Haarlem2 strain appears to be more successful than other circulating MDR TB strains and than its susceptible counterpart (of 25 Haarlem2 strains, 20 were MDR TB). This phenomenon could be associated with a bias in the sample resulting from the specialized nature of the hospital or it could be that the MDR TB version has become predominant in the population because of the low fitness cost of its 2 mutations, katG315 and S531L (10,11))). In addition, the presence of clusters suggests that even though new technologies have reduced the time taken to diagnose drug resistance, more rapid initial diagnosis of MDR TB to reduce transmission still is needed (12).
All except 1 of the rpoB mutations in the MDR TB strains were at nt positions 1303–1375. This finding reinforces the value of incorporating already standardized molecular methods for rapidly detecting resistance. Cost is the main reason they are currently not available, but the macroarrays used in this project are inexpensive and have the additional advantage of analyzing katG and inhA mutations independently.
Dr Gonzalo is a clinician and microbiologist working in the private and public health sector in Argentina on HIV, tuberculosis, and clinical microbiology. Her research interests include tuberculosis, mycobacteria, molecular epidemiology, and HIV.
We thank Juan Metrebian and Edward Hogg for their constant support and encouragement and Preya Vekaria for her advice and help.
- Ritacco V, Di Lonardo M, Reniero A, Ambroggi M, Barrera L, Dambrosi A, Nosocomial spread of human immunodeficiency virus–related multidrug-resistant tuberculosis in Buenos Aires. J Infect Dis. 1997;176:637–42.
- Comes Y, Forlenza R. Analisis de situación de salud de la población de la ciudad de Buenos Aires según la distribución geográfica de comunas.2006. Departamento de Epidemiología, Dirección General Adj. de Aps, Comité de Análisis de Situación de Salud, Ministerio de Salud, Gobierno de la Ciudad de Buenos Aires [cited 2010 Nov 15]. http://estatico.buenosaires.gov.ar/areas/salud/epidemiologia/archivos/asis/asis%202006%20n3.pdf
- Canetti G, Froman S, Grosset J, Hauduroy P, Langerova M, Mahler HT, Mycobacteria: laboratory methods for testing drug sensitivity and resistance. Bull World Health Organ. 1963;29:565–78.
- Gibson A, Brown T, Baker L, Drobniewski F. Can 15-locus mycobacterial interspersed repetitive unit–variable-number tandem repeat analysis provide insight into the evolution of Mycobacterium tuberculosis? Appl Environ Microbiol. 2005;71:8207–13.
- Iwamoto T, Yoshida S, Suzuki K, Tomita M, Fujiyama R, Tanaka N, Hypervariable loci that enhance the discriminatory ability of newly proposed 15-loci and 24-loci variable-number tandem repeat typing method on Mycobacterium tuberculosis strains predominated by the Beijing family. FEMS Microbiol Lett. 2007;270:67–74.
- Brown TJ, Herrera-Leon L, Anthony RM, Drobniewski FA. The use of macroarrays for the identification of MDR Mycobacterium tuberculosis. J Microbiol Methods. 2006;65:294–300.
- Brudey K, Filliol I, Ferdinand S, Guernier V, Duval P, Maubert B, Long-term population-based genotyping study of Mycobacterium tuberculosis complex isolates in the French Departments of the Americas. J Clin Microbiol. 2006;44:183–91.
- Durmaz R, Zozio T, Gunal S, Yaman A, Cavusoglu C, Guney C, Genetic diversity and major spoligotype families of drug-resistant Mycobacterium tuberculosis clinical isolates from different regions in Turkey. Infect Genet Evol. 2007;7:513–9.
- Ritacco V, López B, Cafrune P, Mycobacterium tuberculosis strains of the Beijing genotype are rarely observed in tuberculosis patients in South America. Mem Inst Oswaldo Cruz. 2008;103:489–92.
- Palmero D, Cusmano L, Bucci Z, Romano M, Ruano S, Waisman J. Infectiousness and virulence of multidrug-resistant and drug susceptible tuberculosis in adult contacts. Medicina (B Aires). 2002;62:221–5.
- Borrell S, Gagneux S. Infectiousness, reproductive fitness and evolution of drug-resistant Mycobacterium tuberculosis. Int J Tuberc Lung Dis. 2009;13:1456–66.
- Waisman JL, Palmero DJ, Güemes-Gurtubay JL, Videla JJ, Moretti B, Cantero M, Evaluación de las medidas de control adoptadas frente a la epidemia de tuberculosis multirresistente asociada al SIDA en un hospital hispanoamericano. Enferm Infecc Microbiol Clin. 2006;24:71–6.
Suggested citation for this article: Gonzalo X, Ambroggi M, Cordova E, Brown T, Poggi S, Drobniewski F. Molecular epidemiology of Mycobacterium tuberculosis, Buenos Aires, Argentina. Emerg Infect Dis [serial on the Internet]. 2011 Mar [date cited]. http://dx.doi.org/10.3201/eid1703100394