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Volume 17, Number 5—May 2011

Research

Molecular Epidemiology of Oropouche Virus, Brazil

Helena Baldez Vasconcelos, Márcio R.T. Nunes, Lívia M.N. Casseb, Valéria L. Carvalho, Eliana V. Pinto da Silva, Mayra Silva, Samir M.M. Casseb, and Pedro F.C. VasconcelosComments to Author 
Author affiliations: Author affiliations: Instituto Evandro Chagas, Ananindeua, Brazil (H. Baldez Vasconcelos, M.R.T. Nunes, L.M.N. Casseb, V.L. Carvalho, E.V. Pinto da Silva, M. Silva, S.M.M. Casseb, P.F.C. Vasconcelos); Universidade do Estado do Pará, Belém, Brazil (P.F.C. Vasconcelos)

Main Article

Table A1

Oropouche virus strains used for phylogenetic analysis and time-scaled analysis*

Label Strains Source of isolation Year Place of isolation† GenBank accession no.
TR01 TRVL 9760 Human 1955 Sangre Grande, Trinidad and Tobago S: AF164531
PA01 AR 19886 Ochlerotatus serratus mosquitoes 1960 BR 14 KM 94 (Ipixuna), Pará S: HM470107; M: HQ830373; L: HQ830408
PA02 AN 19991 Bradypus tridactylus 1960 São Miguel do Guamá, Pará S: AF164532; M: AF 441119; L: AF 484424
PA03 H 29086 Human 1961 Belém, Pará S: HM470108; M: HQ830374; L: HQ830409
PA04 H 29090 Human 1961 Belém, Pará S: HM470109; M: HQ830375; L: HQ830410
PA 05 H 121293 Human 1967 Bragança, Pará S: HM470110; M: HQ830376; L: HQ830411
PA06 AR 136921 Culex quinquefasciatus mosquitoes 1968 Belém, Pará S: HQ830443; M: HQ830377; L: HQ830412
PA07 AN 206119 B. trydactilus 1971 Maracanã, Pará S: AY993909; M: HQ830378; L: HQ830413
PA08 AN 208402 B. trydactilus 1971 Maracanã, Pará S:AY993910; M: HQ830379; L: HQ830414
PA09 AN 208819 B. trydactilus 1971 Maracanã, Pará S:AY993911; M: HQ830380; L: HQ830415
PA10 AN 208823 B. trydactilus 1971 Maracanã, Pará S: AY993912
PA11 H 244576 Human 1973 Belém, Pará S: HQ830444
PA12 H 271708 Human 1975 Santarém, Pará S: HQ830445
PA13 AR 271815 1975 Santarém, Pará S: AF164533
PA14 H 355173 Human 1978 Ananindeua, Pará S: HM470114; M: HQ830381; L: HQ830416
PA15 H 355186 Human 1978 Tomé-Açu, Pará S: HQ830446
PA16 H 356898 Human 1978 Belém, Pará S: HQ830447
PA17 AR 366927 Culicoides paraensis mosquitoes 1979 Belém, Pará S: HQ830448; M: HQ830382; L: HQ830417
PA18 H 366781 Human 1979 Belém, Pará S: HQ830449
PA19 H 381114 Human 1980 Belém, Pará S: AF164435
PA20 H 384192 Human 1980 Portel, Pará S: HQ830450
PA21 H 384193 Human 1980 Portel, Pará S: HQ830451
PA22 H 385591 Human 1980 Belém, Pará S: HQ830452; M: HQ830383; L: HQ830418
AM01 H 389865 Human 1980 Manaus, Amazonas S: HQ830453; M: HQ830384; L: HQ830419
AM02 H 390233 Human 1980 Manaus, Amazonas S: AF154536
AM03 H 390242 Human 1980 Manaus, Amazonas S: HQ830454; M: HQ830385; L: HQ830420
MA01 AR 473358 1988 Porto Franco, Maranhão S: AF164539
MA02 H 472433 Human 1988 Porto Franco, Maranhão S: HQ830455; M: HQ830386; L: HQ830421
MA03 H 472435 Human 1988 Porto Franco, Maranhão S: HQ830456; M: HQ830387; L: HQ830422
MA04 H 472200 Human 1988 Porto Franco, Maranhão S: AF154537
MA05 H 472204 Human 1988 Porto Franco, Maranhão S: AF164538
PA23 H 475248 Human 1988 Tucurui, Pará S: AF164540
PN01 GML 444477 Human 1989 Chame, Panama S: AF164555
PN02 GML 444911 Human 1989 Chame, Panama S: AF164556
PN03 GML 445252 Human 1989 San Miguelito, Panama S: AF164557
PN04 GML 450093 Human 1989 Chilibre, Panama S: AF164558
RO01 H 498913 Human 1990 Machadinho D'Oeste, Rondônia S: HQ830457; M: HQ830388; L: HQ830423
RO02 H 505442 Human 1991 Ouro Preto D'Oeste, Rondônia S: AF164542
RO03 H 505663 Human 1991 Ariquemes, Rondônia S: AF164543
RO04 H 505764 Human 1991 Ariquemes, Rondônia S: HQ830458
RO05 H 505768 Human 1991 Ariquemes, Rondônia S: HQ830459; M: HQ830389; L: HQ830424
RO06 H 505805 Human 1991 Ariquemes, Rondônia S: HQ830460
PA24 H 504514 Human 1991 Santa Izabel, Pará AF164541
PE01 IQT 1690 1992 Iquitos, Peru AF164549
MA06 H 521086 Human 1993 Barra do Corda, Maranhão S:AY704559; M: HQ830390; L: HQ830425
PE02 MD O 23 Human 1993 Madre de Dios, Peru S: AF164550
PE03 DE I209 Human 1993 Iquito, Peru S: AF164551
PA25 H 532314 Human 1994 Serra Pelada, Pará S: HQ830461; M: HQ830391; L: HQ830426
PA26 H 532422 Human 1994 Serra Pelada, Pará S: HQ830462; M: HQ830392; L: HQ830427
PA27 H 532490 Human 1994 Serra Pelada, Pará S: HQ830463; M: HQ830393; L: HQ830428
PA28 H 532500 Human 1994 Serra Pelada, Pará S: HQ830464; M: HQ830394; L: HQ830429
PA29 H 541140 Human 1994 Altamira, Pará S: HM470126; M: HQ830395; L: HQ830430
PA30 H 541863 Human 1996 Vitória do Xingu, Pará S: AF164544
PA31 H 544552 Human 1996 Altamira, Pará S: AF164546
PA32 H 543033 Human 1996 Oriximiná, Pará S: AF164545
AC01 H 543091 Human 1996 Xapuri, Acre S: HQ830465
AC02 H 543100 Human 1996 Xapuri, Acre S: HQ830466; M: HQ830396; L: HQ830431
AC03 H 543087 Human 1996 Xapuri, Acre S: AF164547
PA33 H 543618 Human 1996 Oriximina, Pará S: AF164548
PA34 H 543629 Human 1996 Oriximina, Pará S: HQ830467; M: HQ830397; L: HQ830432
PA35 H 543638 Human 1996 Oriximina, Pará S: HQ830468
PA36 H 543639 Human 1996 Oriximina, Pará S: HQ830469
PA37 H 543733 Human 1996 Oriximina, Pará S: AY704560
PA38 H 543760 Human 1996 Oriximina, Pará S: HQ830470; M: HQ830398; L: HQ830433
PA39 H 543857 Human 1996 Oriximina, Pará S: HQ830471; M: HQ830399; L: HQ830434
PA40 H 543880 Human 1996 Oriximina, Pará S: HQ830472
PE04 IQT 4083 1997 Iquitos, Peru S: AF164552
PE05 IQT 1–812 1998 Iquitos, Peru S: AF164553
PE06 IQT 7085 1998 Iquitos, Peru S: AF164554
MG01 AN 622998 Callitrhix sp.monkeys 2000 Arinos, Minas Gerais S: AY117135; M: HQ830401; L: HQ830436
TO01 H 622544 Human 2002 Paranã, Tocantins S: EF467368
PA41 H 669314 Human 2003 Parauapebas, Pará S: EF467370; M: HQ830400; L: HQ830435
PA42 H 669315 Human 2003 Parauapebas, Pará S: EF467369; M: HQ830402; L: HQ830437
PA43 H 682426 Human 2004 Porto de Moz, Pará S: EF467371; M: HQ830403; L: HQ830438
PA44 H 682431 Human 2004 Porto de Moz, Pará S: EF467372; M: HQ830404; L: HQ830439
PA45 H 706890 Human 2006 Igarapé Açu, Pará S: HQ830473
PA46 H 706893 Human 2006 Igarapé Açu, Pará S: HQ830474
PA47 H 708139 Human 2006 Magalhães Barata, Pará S: HQ830475; M: HQ830405; L: HQ830440
PA48 H 707157 Human 2006 Maracanã, Pará S: HQ830476
PA49 H 707287 Human 2006 Magalhães Barata, Pará S: HM470137; M: HQ830406; L: HQ830441
PA50 H 708717 Human 2006 Maracanã, Pará S: HQ830477; M: HQ830407; L: HQ830442
AP01 H 758687 Human 2009 Mazagão, Amapá S: HQ830478
AP02 H 758669 Human 2009 Mazagão, Amapá S: HQ830479
AP03 H 759525 Human 2009 Mazagão, Amapá S: HQ830480
AP04 H759541 Human 2009 Mazagão, Amapá S: HQ830481
AP05 H 759531 Human 2009 Mazagão, Amapá S: HQ830482
AP06 H 759558 Human 2009 Mazagão, Amapá S: HQ830483
AP07 H 759038 Human 2009 Mazagão, Amapá S: HQ830484
AP08 H 759562 Human 2009 Mazagão, Amapá S: HQ830485
AP09 H 759018 Human 2009 Mazagão, Amapá S: HQ830486
AP10 H 759023 Human 2009 Mazagão, Amapá S: HQ830487
AP11 H 759041 Human 2009 Mazagão, Amapá S: HQ830488
AP12 H 759042 Human 2009 Mazagão, Amapá S: HQ830489
AP13 H 759043 Human 2009 Mazagão, Amapá S: HQ830490
AP14 H 759044 Human 2009 Mazagão, Amapá S: HQ830491
AP15 H 759483 Human 2009 Mazagão, Amapá S: HQ830492

*TRVL, Trinidad Virus Laboratory; S, small RNA; AR: arthropod; M, medium RNA; L, large RNA; H: human; An: animal; GML, Gorgas Memorial Laboratory; IQT, Iquitos; MD, Madre de Dios; DE, OROV strain from Iquitos.
†All locations in Brazil except as indicated.

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