Volume 18, Number 3—March 2012
Research
A Systematic Approach for Discovering Novel, Clinically Relevant Bacteria
Table A2
Tentative novel species of bacteria represented by multiple isolates (clusters)
| Taxon | In clusters |
Not in clusters |
Total |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. (%) isolates | Identity, %* | No. clusters | Size |
No. isolates | Identity, %* | No. isolates | Identity, % | |||||
| Min | Max | Med | ||||||||||
| Actinomycetales | 176 (60) | 98.1 | 45 | 2 | 15 | 3 | 118 | 97.1 | 294 | 97.7 | ||
| Pseudomonadales | 30 (54) | 97.1 | 8 | 2 | 11 | 2.5 | 26 | 96.8 | 56 | 97.0 | ||
| Lactobacillales | 28 (74) | 97.9 | 8 | 2 | 5 | 3.5 | 10 | 95.1 | 38 | 97.1 | ||
| Bacillales | 27 (44) | 96.5 | 7 | 2 | 12 | 2 | 34 | 94.1 | 61 | 95.1 | ||
| Flavobacteriales | 20 (49) | 92.9 | 6 | 2 | 7 | 3 | 21 | 95.6 | 41 | 94.3 | ||
| Enterobacteriales | 19 (58) | 98.3 | 4 | 2 | 10 | 3.5 | 14 | 98.0 | 33 | 98.2 | ||
| Burkholderiales | 15 (38) | 97.3 | 6 | 2 | 4 | 2 | 24 | 97.6 | 39 | 97.4 | ||
| Cardiobacteriales | 8 (89) | 98.9 | 1 | 8 | 1 | 97.5 | 9 | 98.7 | ||||
| Rhizobiales | 6 (43) | 93.5 | 2 | 2 | 4 | 8 | 97.0 | 14 | 95.5 | |||
| Neisseriales | 5 (33) | 97.9 | 2 | 2 | 3 | 10 | 96.9 | 15 | 97.3 | |||
| Fusobacteriales | 3 (50) | 98.7 | 1 | 3 | 3 | 93.5 | 6 | 96.1 | ||||
| Rhodospirillales | 3 (43) | 97.2 | 1 | 3 | 4 | 96.9 | 7 | 97.0 | ||||
| Clostridiales | 2 (20) | 97.7 | 1 | 2 | 8 | 94.3 | 10 | 95.0 | ||||
| Pasteurellales | 2 (14) | 98.9 | 1 | 2 | 12 | 96.2 | 14 | 96.6 | ||||
| Sphingomonadales | 2 (25) | 97.9 | 1 | 2 | 6 | 97.1 | 8 | 97.3 | ||||
| Xanthomonadales | 2 (25) | 95.5 | 1 | 2 | 5 | 97.1 | 7 | 96.7 | ||||
| Caulobacterales | 7 | 97.6 | 7 | 97.6 | ||||||||
| Bacteroidales | 5 | 92.3 | 5 | 92.3 | ||||||||
| Sphingobacteriales | 4 | 87.0 | 4 | 87.0 | ||||||||
| Rhodocyclales | 2 | 95.5 | 2 | 95.5 | ||||||||
| Desulfovibrionales | 1 | 94.6 | 1 | 94.6 | ||||||||
| Micrococcineae | 1 | 97.4 | 1 | 97.4 | ||||||||
| Rhodobacterales | 1 | 98.4 | 1 | 98.4 | ||||||||
| Total | 348 (52) | 325 | 673 | |||||||||
*Sequence identity to the closest GenBank match with species designation (match %). Min, minimum; max, maximum; med, median.
1These authors contributed equally to this article.
