We captured animals on 2 consecutive nights at each of 3 sites in the San Francisco Bay area of California during June 2014: Windy Hill (37.37315°, −122.22466°) and Thornewood (37.39086°, −122.25066°) Open Space Preserves (OSP) in San Mateo County, and Foothills Park (37.36243°, −122.17362°) in Santa Clara County. We chose these sites on the basis of local B. miyamotoi prevalence of 3.6%–10.7% in I. pacificus nymphs (5). Trapping occurred in June to coincide with the peak abundance of nymphal black-legged ticks and so perhaps increase the chance that B. miyamotoi would be circulating in animal populations (11). Animals were captured using Sherman live traps baited with peanut butter and oats.

We anesthetized captured animals with isoflurane, identified them by morphology using taxonomic guides, and examined them for ticks. We obtained blood and ear-tissue biopsy samples from each individual and tested both sample types for Borrelia spp. because different Borrelia species may vary in tissue tropism (9).

We extracted DNA from all samples (i.e., whole blood, ear punch biopsies, and ticks) using DNeasy Blood and Tissue Kits (QIAGEN, Valencia, CA, USA) and assayed for the presence of Borrelia using quantitative PCR (qPCR) (9), which is able to detect as few as 10 spirochetes. We sequenced all qPCR-positive samples using a primer set targeting the intergenic spacer rrs-rrlA locus, which allowed for differentiation of Borrelia genospecies (12). Alignments were made in ClustalX (http://www.clustal.org). We compared our sequences from I. pacificus ticks and wild-caught rodents (GenBank accession nos. MH342008–31) to representative GenBank sequences from isolates found in other sites in California (accession nos. KT343321, KT343334, KT343337, KU184505, KF957668), elsewhere in the United States (accession nos. HQ658901, HQ658902, AY374140, AY37139, AY374138, AY363706, GU993308, KY293400, KY293399, KY293398, KY293397, KY293396, GQ856588, GU993309, GQ856589), Japan (accession nos. AY363703, AY363704), and Sweden (accession no. AY363705). We conducted phylogenetic reconstruction using MrBayes (http://mrbayes.csit.fsu.edu/) and visualizations using FigTree (http:// tree.bio.ed.ac.uk/software/figtree/).

We captured a total of 117 small mammals from 5 species (Table 1). Our surveillance efforts demonstrate that B. miyamotoi infects woodrats (Neotoma fuscipes), brush mice (Peromyscus boylii), and California mice (P. californicus) (Table 2). At sites where B. miyamotoi was present in small mammals, B. miyamotoi prevalence was 6%–33% in different host species (Table 2). These data reflect B. miyamotoi prevalence in small-mammal hosts in other geographic regions: 10.7% of voles and mice (n = 65) in the Netherlands, where nymphal infection prevalence (NIP) of B. miyamotoi in I. ricinus ticks is 2.5% (84/3360) (7), and 6.5% of white-footed mice (P. leucopus) in the northeastern United States, where NIP in I. scapularis ticks is 5.5% (38/689) (9). We did not observe B. miyamotoi in pinyon mice or deer mice, either because of small sample sizes or because these species are not involved in B. miyamotoi transmission. In nearby Alameda County, B. miyamotoi was not observed in small mammals (10); possible reasons are that the spirochete is rarer in this locality (NIP = 0.4% in Alameda study sites), that mammal capture periods were dispersed across multiple years and not as coincident with nymphal tick activity, or that brush mice and California mice were not captured at that location.

Other identified Borrelia species included B. bissettiae in 1 pinyon mouse (P. truei) and 1 brush mouse, which mirrors earlier studies of B. bissettiae from farther north in California (13,14). Woodrats, California voles (Microtus californicus), deer mice (P. maniculatus), and black rats (Rattus rattus) have also been observed infected with B. bissettiae (10,13). During previous tick sampling efforts at our study sites, we did not detect B. bissettiae in questing western black-legged ticks (3,5).

We did not find B. burgdorferi sensu stricto, although we observed uncharacterized B. burgdorferi sensu lato infection in 1 California mouse. None of the animals captured in the redwood habitat (Thornewood OSP) were infected with Borrelia spp., although the sample size was small at this location (Table 1). We found a co-infection of B. burgdorferi sl and B. miyamotoi in a brush mouse. Co-infections of B. burgdorferi and B. miyamotoi have previously been reported from mice and ticks in the northeastern United States (9) and from ticks in Marin County, California (4).

Five mammals were infested with I. angustus ticks, of which we observed all 3 life stages. In redwood habitat at Thornewood OSP, 1 California mouse hosted 2 adult females and a nymph, 1 brush mouse was infested with 2 adult females and 2 nymphs, and 1 brush mouse carried 1 female and 1 nymphal tick. Of 2 brush mice captured at Windy Hill, 1 harbored 3 larvae and the other 5 larvae. None of the 17 I. angustus ticks tested positive for Borrelia spp., nor did the host animals from which the ticks were removed. We found no I. pacificus ticks infesting the small mammals.

Figure

Figure. Phylogenetic tree of Borrelia miyamotoi intergenic spacer (rrs-rrlA) sequences isolated from wild-caught rodents and ticks (black dots) from California, USA, in study of Borrelia spp. in small mammal species in the...

Phylogenetic analyses suggest that B. miyamotoi in California is a single strain, separate from B. miyamotoi in the eastern United States and from strains circulating in Asia and Europe (Figure), corroborating an earlier study (15). Sequences from I. pacificus ticks previously collected in the San Francisco Bay area were identical to the sequences obtained from rodent infections.

The identification of B. miyamotoi in small mammals in California mirrors research from other locations that have documented the spirochete in small rodents. It is premature to claim these infected species as B. miyamotoi reservoirs (i.e., responsible for maintenance of the pathogen and acting as a source for of zoonotic transmission), in part because B. miyamotoi can also be transmitted transovarially in the tick population; local maintenance of the spirochete may not require a reservoir host. Nonetheless, in California, where B. miyamotoi clusters into a single, well-supported phylogenetic clade, the spirochete appears to be circulating among rodent species. Xenodiagnostic investigation of these putative reservoir species, as well as more comprehensive investigations of the reservoir potential of other local fauna, including larger mammals (e.g., squirrels and deer) and birds, will further elucidate the ecology of B. miyamotoi in California.