Volume 16, Number 6—June 2010
Research
Rift Valley Fever during Rainy Seasons, Madagascar, 2008 and 2009
Soa Fy Andriamandimby, Armand Eugène Randrianarivo-Solofoniaina, Elisabeth M. Jeanmaire, Lisette Ravololomanana, Lanto Tiana Razafimanantsoa, Tsanta Rakotojoelinandrasana, Josette Razainirina, Jonathan Hoffmann, Jean-Pierre Ravalohery, Jean-Théophile Rafisandratantsoa, Pierre E. Rollin, and Jean-Marc Reynes1
Table
Features of 46 sequenced Rift Valley fever viruses, Madagascar, 2008–2009
| Code | Species | Sample type | Sampling date | District of sampling | Coding sequences |
||
|---|---|---|---|---|---|---|---|
| Small | Medium | Large | |||||
| 212-08 | Human | Serum | 2008 Jan 30 | Tolagnaro | Yes | Yes | Yes |
| 406-08 | Bovine | Fetal liver | 2008 Feb 20 | Miarinarivo | Yes | Yes | Yes |
| 413-08 | Bovine | Fetal liver | 2008 Feb 20 | Antsirabe II | Yes | Yes | Yes |
| 427-08 | Human | Serum | 2008 Feb 22 | Anjozorobe | Yes | Yes | Yes |
| 428-08 | Human | Serum | 2008 Feb 15 | Anjozorobe | Yes | Yes | Yes |
| 435-08 | Bovine | Serum | 2008 Feb 22 | Anjozorobe | Yes | No | Yes |
| 437-08 | Bovine | Serum | 2008 Feb 22 | Anjozorobe | Yes | No | No |
| 448-08 | Human | Serum | 2008 Feb 26 | Anjozorobe | Yes | Yes | Yes |
| 449-08 | Human | Serum | 2008 Feb 26 | Anjozorobe | Yes | No | Yes |
| 619-08 | Human | Serum | 2008 Mar 9 | Ankazobe | Yes | Yes | Yes |
| 682-08 | Human | Serum | 2008 Mar 12 | Ambatondrazaka | Yes | Yes | Yes |
| 683-08 | Human | Serum | 2008 Mar 12 | Ambatondrazaka | Yes | Yes | Yes |
| 684-08 | Human | Serum | 2008 Mar 12 | Ambatondrazaka | Yes | Yes | Yes |
| 693-08 | Human | Serum | 2008 Mar 11 | Amparafaravola | Yes | Yes | Yes |
| 776-08 | Human | Serum | 2008 Mar 14 | Ambatondrazaka | Yes | Yes | Yes |
| 779-08 | Human | Serum | 2008 Mar 16 | Amparafaravola | Yes | No | Yes |
| 845-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 846-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 847-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 848-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 849-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 850-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | No |
| 851-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 852-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 853-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 854-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
| 855-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | Yes | Yes |
| 856-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | No | Yes |
| 857-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | No | No |
| 859-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | No | Yes |
| 863-09 | Human | Serum | 2008 Mar 25 | Antananarivo | Yes | Yes | Yes |
| 878-09 | Human | Serum | 2008 Mar 26 | Amparafaravola | Yes | Yes | Yes |
| 879-08 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
| 889-08 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | No |
| 892-09 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
| 895-09 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
| 897-08 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
| 1464-08 | Human | Serum | 2008 Mar 28 | Tolagnaro | Yes | Yes | Yes |
| 1585-08 | Caprine | Serum | 2008 Apr 13 | Antsiranana I | Yes | Yes | Yes |
| 1586-08 | Human | Serum | 2008 Apr 15 | Antavy Atsimo | Yes | Yes | Yes |
| 1627-08 | Bovine | Serum | 2008 Apr 18 | Ambalavao | Yes | Yes | Yes |
| 1695-08 | Ovine | Serum | 2008 Apr 20 | Antsiranana II | Yes | Yes | Yes |
| 1730-08 | Bovine | Spleen | 2008 Apr 25 | Fianarantsoa I | Yes | Yes | Yes |
| 2032-08 | Human | Serum | 2008 May 25 | Amparafaravola | Yes | Yes | Yes |
| 2033-08 | Human | Serum | 2008 Apr 29 | Amparafaravola | Yes | Yes | Yes |
| 2034-08 | Human | Serum | 2008 Apr 23 | Amparafaravola | Yes | Yes | Yes |
| 6510-08 | Bovine | Liver | 2008 Dec 1 | Fianarantsoa I | Yes | Not done | Not done |
| 6546-08 | Bovine | Liver | 2008 Nov 28 | Fianarantsoa I | Yes | Not done | Not done |
| 6547-08 | Bovine | Liver | 2008 Nov 29 | Fianarantsoa II | Yes | Not done | Not done |
| 6660-08 | Human | Serum | 2008 Dec 12 | Fianarantsoa I | Yes | Not done | Not done |
