Volume 17, Number 11—November 2011
CME ACTIVITY
Close Similarity between Sequences of Hepatitis E Virus Recovered from Humans and Swine, France, 2008−2009
Jérôme Bouquet, Sophie Tessé, Aurélie Lunazzi, Marc Eloit, Nicolas Rose, Elisabeth Nicand, and Nicole Pavio
Table A1
List of hepatitis E virus reference sequences from Genbank used for phylogenetic analyses of strains identified in France, May 2008–November 2009*
| Accession no. | Name | Host | Country | Genotype |
|---|---|---|---|---|
| AF336291 | NLSW22 | Swine | Netherlands | 3a |
| AF082843 | swUS1 | Swine | USA | 3a |
| AF466665 | UMC12B | Swine | USA | 3a |
| AF060668 | US-1 | Human | USA | 3a |
| AB115544 | HE-JA23 | Human | Japan | 3b |
| AB189075 | JYO-Hyo03L | Human | Japan | 3b |
| AB073912 | swJ570 | Swine | Japan | 3b |
| AF336298 | NLSW105 | Swine | Netherlands | 3c |
| AF336290 | NLSW20 | Swine | Netherlands | 3c |
| AF296167 | TW3SW | Swine | Taiwan | 3d |
| AF503512 | P143/11/02 | Swine | UK | 3e |
| AY362357 | UK8734 | Human | UK | 3e |
| AY032758 | NLSW50 | Swine | Netherlands | 3f |
| EU495148 | TLS25 | Human | France | 3f |
| AF195061 | VH1 | Human | Spain | 3f |
| AF455784 | Osh205 | Swine | Kyrgyzstan | 3g |
| FJ705359 | wbGER27 | Wild boar | Germany | 3i |
| AY115488 | Arkell | Swine | Canada | 3j |
| AB108537 | CCC220 | Human | China | 4 |
| AB161717 | JSM-Sap95 | Human | Japan | 4 |
| FJ610232 | swCH189 | Swine | China | 4 |
| AB097811 | swJ13-1 | Swine | Japan | 4 |
*HEV, hepatitis E virus.
