Yuki Matsushima, Hideaki Shimizu, Atsuko Kano, Etsuko Nakajima, Yoko Ishimaru, Shuvra Kanti Dey, Yuki Watanabe, Fuyuka Adachi, Keiichiro Suzuki, Kohnosuke Mitani, Tsuguto Fujimoto, Tung Gia Phan, and Hiroshi Ushijima
Author affiliations: Kawasaki City Institute of Public Health, Kanagawa, Japan (Y. Matsushima, H. Shimizu, A. Kano, E. Nakajima, Y. Ishimaru); Nihon University School of Medicine, Tokyo, Japan (K. Dey, H. Ushijima); Saitama Medical School, Saitama, Japan (Y. Watanabe, F. Adachi, K. Suzuki, K. Mitani); National Institute of Infectious Diseases, Tokyo (T. Fujimoto); Blood Systems Research Institute, San Francisco, California, USA (T.G. Phan)
Figure A2. . SimPlot analyses for identifying recombination sites in the hexon gene (A), penton base gene (B), and fiber gene, including the outside of the coding sequence, (C) of human adenoviruses (HAdVs). The x-axes indicate nucleotide positions in these genes, and the y-axes indicate similarities between HAdV-65 and other HAdV-D reference strains. Parameters used were a 200-bp window, a 20-bp step, and a Kimura 2-parameter. HVL1; hypervariable loop 1; RGD, Arg-Gly-Asp.
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