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Volume 18, Number 6—June 2012

Dispatch

Molecular Epidemiology of Laguna Negra Virus, Mato Grosso State, Brazil

Elizabeth S. Travassos da Rosa, Daniele B.A. Medeiros, Márcio R.T. Nunes, Darlene B. Simith, Armando de S. Pereira, Mauro R. Elkhoury, Elizabeth Davi Santos, Marília Lavocat, Aparecido A. Marques, Alba V.G. Via, Vânia A. Kohl, Ana C.P. Terças, Paulo D`Andrea, Cibele R. Bonvícino, Elba R. Sampaio de Lemos, and Pedro F.C. VasconcelosComments to Author 
Author affiliations: Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil (E.S. Travassos da Rosa, D.B. Medeiros, M.R. Nunes, D.B. Simith, A.S. Pereira, P.F. Vasconcelos); National Foundation of Health, Brasília, Brazil (M.R. Elkhoury); Surveillance Health Secretariat, Ministry of Health, Brasília (E.D. dos Santos, M. Lavocat); Mato Grosso State Health Secretariat, Cuiabá, Brazil (A.A. Marques; A.V. Via); Universitary Center Cândido Rondon, Cuiabá (V.A. Kohl); Rural Producers Sindicate, Campo Novo do Parecis, Brazil (A.C. Terças); Oswaldo Cruz Foundation, Rio de Janeiro, Brazil (P. D’andrea, C.R. Bonvicino); National Câncer Institute, Rio de Janeiro (C.R. Bonvicino); Pará State University, Belém, Brazil (P.F. Vasconcelos)

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Table A1

Homology between hantavirus strains originating from Mato Grosso, Brazil, and other hantaviruses from South America*

Strains H 651686 H 650736 H 695325 H 713175 H 712518 H 671696 H 653486 H 682807 H 657848 H 660462 H 706738 H 695689 H 696558 H 711891 H 678213 H 710031 AN 649993 AN 650204 AN 650228 LNV APV RIMEV RIOM ANAJV CASV JUQV ARAV
H 651686 98.1 96.8 95.1 95 94.1 95.6 95 95.7 93.5 94.6 92.9 91.6 91.6 92.1 90.1 92.4 93.4 92.8 96.8 71.1 72.7 76.9 72.7 75 72.7 77.2
H 650736 100 96.9 95.3 95.6 94.7 95.9 95.6 94.9 92.8 93.8 92.4 91.3 91.3 91.8 89.7 92.1 92.8 92.1 96.5 70.5 72.5 76.1 73.2 75.2 72.9 77.2
H 695325 100 100 97.1 95.2 94.6 96 95.7 95.9 93.8 94.9 92.7 91.6 91.6 92.1 90 94.3 95.2 94.4 94.1 71.3 71.8 76.3 72.5 74.8 73 76.7
H 713175 100 100 100 96.6 95.7 97.2 96.9 97.1 95.9 97.8 94.7 94.6 94.6 94 92.1 92.2 93.1 92.4 92.8 70.7 73.3 75.6 75 74.5 72.6 78.4
H 712518 100 100 100 100 98.5 99.1 98.5 98.7 96.8 97.8 96.3 95.3 95.3 95.7 93.7 91.8 91.8 91.8 93.8 70.8 73 76.3 77.4 75.5 73 78.2
H 671696 100 100 100 100 100 98.5 97.9 97.8 95.7 96.8 95.3 94.4 94.4 94.9 92.8 90.9 90.9 90.9 93.1 71.3 73.3 76.4 77.1 75.2 72.1 77.2
H 653486 100 100 100 100 100 100 99.4 99 96.9 97.9 96.3 95.3 95.3 95.7 93.7 91.8 91.8 91.9 93.5 71 73.5 76.4 76.9 75.5 73.3 77.2
H 682807 100 100 100 100 100 100 100 98.4 96.3 97.4 95.7 94.7 94.7 95.2 93.1 91.2 91.2 91.3 93.4 70.8 73.3 76 76.8 75.7 73 77.5
H 657848 100 100 100 100 100 100 100 100 97.8 98.8 96.6 95.6 95.6 96 94 91.9 92.2 92.1 92.8 70.7 73 75.9 77.1 75.2 72.6 77.7
H 660462 100 100 100 100 100 100 100 100 100 98.1 95.4 94.9 94.9 95.2 96.2 90.7 91 90.9 90.9 70.4 72.2 75.9 79.2 76 73.2 78.2
H 706738 100 100 100 100 100 100 100 100 100 100 96.6 96.8 96.8 96.2 94.3 91.9 92.2 92.1 91.9 70.5 72.7 76 77.2 75 72.6 77.5
H 695689 100 100 100 100 100 100 100 100 100 100 100 96.2 96.2 96.8 95.3 93.7 95.3 94.6 90.9 71.3 72.5 76.4 78 75 73.6 77.5
H 696558 100 100 100 100 100 100 100 100 100 100 100 100 100 99 96.8 94.4 92.5 92.5 90.2 71.1 73.5 76.7 78.3 76.2 73.2 77.7
H 711891 100 100 100 100 100 100 100 100 100 100 100 100 100 99 96.8 94.4 92.5 92.5 90.2 71.1 73.5 76.7 78.3 76.2 73.2 77.7
H 678213 100 100 100 100 100 100 100 100 100 100 100 100 100 100 96.6 94.6 93.1 93.1 90.6 71.1 73 76.6 78.1 75.5 73.3 77.5
H 710031 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 94.6 92.6 92.6 88.7 71.3 72.9 77 81 76.5 74.2 79.4
AN 649993 99.6 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 97.5 98.1 90.9 71.9 71.3 77.3 74.8 75.5 74.2 78.2
AN 650204 99.6 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 98.4 91.6 72.3 71.5 77.5 75 74.3 74.4 77.2
AN 650228 99.6 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 90.7 72.5 71.3 78.6 75 74 74.6 77
LNV 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 72.3 72.7 77.9 74.4 75.5 75.3 77.7
APV 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.7 96.3 96.3 96.3 96.7 76.6 76.6 79 76 72.6 76.2
RIMEV 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.8 94.2 94.2 94.2 94.8 96.2 76.8 78.9 72.8 70 72.8
RIOMV 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.7 97.1 97.1 97.1 97.7 99.1 97.3 81 74.3 73.2 79.9
ANAJV 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96.2 96 96 96 96.2 96.7 95 93.8 76.2 75.7 77.2
CASV 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91.5 91 91 91 91.5 89.7 56.6 56 57.5 79.4 77
JUQV 92 92 92 92 92 92 92 92 92 92 92 92 92 92 92 92 91.5 91.5 91.5 92 90.6 86.4 86.7 89.1 96.3 79.2
ARAV 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90.6 90 90 90 90.6 90.6 56.1 56 57.5 95.6 93.9

*Numbers above the diagonal indicate nucleotide sequence identity and numbers below the diagonal indicate amino acid sequence identity. Gray shading corresponds to the genetic relationship (nucleotides and amino acids) of hantavirus strains isolated from humans (H) and rodents (AN) with the Laguna Negra virus. APV, Alto Paraguay virus; ARAV, Araraquara virus; ANAJV, Anajatuba virus; CASV, Castelo dos Sonhos virus; JUQV, Juquitiba-Araucaria virus; LNV, Laguna Negra virus; RIOMV, Rio Mamore virus; RIMEV, Rio Mearim virus.

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