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Volume 5, Number 2—April 1999


Malaria Reemergence in the Peruvian Amazon Region

Javier Aramburú Guarda*, César Ramal Asayag*, and Richard Witzig†
Author affiliations: *Loreto Department of Public Health, Iquitos, Peru;; †Centers for Disease Control and Prevention, Atlanta, Georgia, USA

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EID Guarda JA, Asayag CR, Witzig R. Malaria Reemergence in the Peruvian Amazon Region. Emerg Infect Dis. 1999;5(2):209-215.
AMA Guarda JA, Asayag CR, Witzig R. Malaria Reemergence in the Peruvian Amazon Region. Emerging Infectious Diseases. 1999;5(2):209-215. doi:10.3201/eid0502.990204.
APA Guarda, J. A., Asayag, C. R., & Witzig, R. (1999). Malaria Reemergence in the Peruvian Amazon Region. Emerging Infectious Diseases, 5(2), 209-215.


Epidemic malaria has rapidly emerged in Loreto Department, in the Peruvian Amazon region. Peru reports the second highest number of malaria cases in South America (after Brazil), most from Loreto. From 1992 to 1997, malaria increased 50-fold in Loreto but only fourfold in Peru. Plasmodium falciparum infection, which has increased at a faster rate than P. vivax infection in the last 3 years, became the dominant Plasmodium infection in the highest transmission areas in the 1997 rainy season. The vector Anopheles darlingi has also increased during this epidemic in Loreto. Moreover, chloroquine and pyrimethamine-sulfadoxine drug-resistant P. falciparum strains have emerged, which require development of efficacious focal drug treatment schemes.

Figure 1

Thumbnail of The department of Loreto and the city of Iquitos in Peru.

Figure 1. The department of Loreto and the city of Iquitos in Peru.

The Peruvian Department of Loreto is the last part of the greater Amazon region to report the reemergence of epidemic malaria after the eradication efforts of the 1960s. Loreto, which comprises nearly one-fourth of the land mass of Peru, has the ecologic characteristics of the Amazon lowlands (Figure 1). In central Loreto, the Marañon and Ucayali Rivers combine to form the nascent Amazon River. Iquitos (population 345,000), the only large urban center in Loreto, is accessible only by air or river. The rural population of 474,000 is clustered in towns and villages throughout the Amazon tributary system. Loreto's economy relies on basic agriculture, fishing, lumber, commercial activities, and petroleum.


Since 1941, the highest number of malaria cases in Peru was 95,000 in 1944, and the lowest was 1,500 cases in 1965 (after the malaria eradication campaign) (1). Plasmodium falciparum infections (chloroquine-sensitive) were confined to the northwestern coastal areas of Peru bordering Ecuador, with occasional reports of cases from the north and eastern Loreto border areas with Ecuador, Colombia, and Brazil.

Figure 2

Thumbnail of Malaria incidence in Loreto, 1992–1997.

Figure 2. Malaria incidence in Loreto, 1992–1997.

Figure 3

Thumbnail of Malaria (all species) incidence in Loreto by month, 1994–1997.

Figure 3. Malaria (all species) incidence in Loreto by month, 1994–1997.

In 1988, no cases of P. falciparum were reported in Loreto. In 1991, 140 cases were reported; the number increased annually until 1997 when 54,290 slide-confirmed P. falciparum cases and 85 deaths were reported (Figure 2). In 1997, a total of 121,268 malaria cases were reported in Loreto; the number indicates an equally dramatic rise in P. vivax malaria. P. malariae is infrequently reported (44 cases in 1997). An additional 36,864 persons were treated for probable malaria (slide-negative or no available laboratory diagnosis) in 1997. Therefore, the number of malaria cases in 1997 reported by slide or clinical definition was 158,115 (2). More Plasmodium infections occurred in males (60.5%) than in females (39.5%). Malaria transmission has been seasonal in the Loreto epidemic, with peaks in the rainy season from November to June (Figure 3).

Figure 4

Thumbnail of Annual parasite index in Loreto, by district (per 1,000 population).

Figure 4. Annual parasite index in Loreto, by district (per 1,000 population).

Malaria around the city of Iquitos accounts for most cases in Loreto. Indigenous P. vivax malaria was initially reported in the Iquitos area (Rumococha and Zungarococha) in April 1991, and P. falciparum was first detected (Padrecocha) in November 1994. A small number of P. falciparum cases have been diagnosed in patients who had not traveled outside Iquitos in the 2 months before illness. Entomologic investigations have confirmed that malaria transmission inside Iquitos is possible. Two high transmission zones surround Iquitos: communities on the Nanay River (which empties into the Amazon after bordering northern and eastern Iquitos) and communities along the first asphalt extension road from Iquitos (the unfinished Iquitos-Nauta road). Two additional high transmission zones include communities on the Yavarí River and the Pastaza River. The annual parasite index (number of malaria cases per 1,000 persons per year), with malaria transmission by districts in Loreto, is shown in Figure 4. The global annual parasite index for Loreto for 1997 was 148 per 1,000 persons.

Figure 5

Thumbnail of A. Age-adjusted incidence rates for Plasmodium falciparum malaria in Loreto, 1996-1997. B. Age-adjusted death rates for Plasmodium falciparum malaria in Loreto, 1996-1997.

Figure 5. A. Age-adjusted incidence rates for Plasmodium falciparum malaria in Loreto, 1996-1997. B. Age-adjusted death rates for Plasmodium falciparum malaria in Loreto, 1996-1997.

Age-specific attack rates of P. falciparum in most of Loreto are consistent with hypoendemic malaria (defined as parasite or spleen rates less than 10% [Figure 5A]), although in 1997 in the highest transmission areas, mesoendemic malaria measurements were transiently documented in prevalence studies (11% to 50% parasite rates) (3). The high parasitemia rates in adults in Loreto emphasize the environmental risks for malaria infection to adults and the lack of immunity in this epidemic. Age-specific death rates have documented a substantial risk for death among those under 5 years of age and among those 60 years of age and older, although the number of deaths in children under 5 years declined in 1997 (Figure 5B). The death rate from P. falciparum malaria has been decreasing (from 1.8 to 1.3 per 1000) in the last 4 years (1994 to 1997).

Because of the current epidemic, Peru reports the second highest number of malaria cases in South America (after Brazil)—most from Loreto (in 1997, Loreto reported 67.2% of the malaria cases in Peru) (4). From 1992 to 1997, malaria increased 50-fold in Loreto and fourfold in Peru. In 1992, 1.6% of malaria cases in Peru were due to P. falciparum; in 1997 (in Loreto), 44.8% of malaria cases were due to P. falciparum (5,6).

Vector Dynamics

Paralleling the malaria epidemic has been an increase in the highly competent and anthropophilic malaria vector, Anopheles darlingi, the principal P. falciparum vector in the Brazilian Amazon (7,8). An. darlingi was not found in the Iquitos area in 1991 (9) when indigenous P. vivax was detected but has now been found in all areas of Loreto and even within Iquitos (10-12). The abundance of An. darlingi, already established when P. falciparum was first reported from the peri-Iquitos area in 1994, is clearly linked to the marked rise in P. falciparum transmission.

An. darlingi larvae habitats around Iquitos include small pools on cleared land, fish hatcheries, areas of poor sanitation, swamps, and the edges of small rivers. An. darlingi in the Iquitos area bite indoors or outdoors from dusk to midnight, with a small dawn peak. An. darlingi represent more than 90% of the anophelines in the peri-Iquitos area in the rainy season; they decrease but remain the major anopheline species in the dry season.

An. benarrochi is the dominant malaria vector in western Loreto, while An. triannulatus is the dominant vector in eastern Loreto. Other Anopheles species in Loreto known to be malaria vectors are An. oswaldoi, An. nuneztovari, and An. rangeli.

Climatic Associations

Loreto has a climate typical of the Amazon region, with a rainy season from November to May and a second precipitation peak in September in the dry season. The El Niño phenomenon in 1997 extended the dry season in Loreto, but caused torrential rains along coastal Peru.

The level of the Amazon River in Iquitos varies 10 meters annually (from 108 to 118 meters above sea level); flooding is usual on the smaller tributaries but infrequent on the main Amazon River. The mean annual temperature is 28oC, the warmest months are September and October, and the humidity is persistently higher than 87% (2).

Figure 6

Thumbnail of Plasmodium falciparum malaria incidence in Loreto. A. Average Amazon River level at Iquitos by month. B. Precipitation at Iquitos by month. C. Average temperature (°C) at Iquitos by month.

Figure 6. Plasmodium falciparum malaria incidence in Loreto. A. Average Amazon River level at Iquitos by month. B. Precipitation at Iquitos by month. C. Average temperature (°C) at Iquitos by month.

Climatic indexes of river level, rainfall, temperature, and humidity at Iquitos were analyzed to determine association with malaria prevalence. The height of the Amazon River at Iquitos depends on rainfall on the eastern side of the Andes Mountains as well as precipitation in Loreto. The height of the Amazon is related to malaria prevalence; the highest river level precedes the malaria prevalence peak by 2 months, and the lowest level precedes the malaria prevalence low by 2 months (Figure 6A). Precipitation peaked twice in 1997: 3 months before and the same month that malaria cases reached their highest number (Figure 6B). The mean temperature was 27°C to 29°C and was inversely associated with malaria cases (Figure 6C). Relative humidity was 87% to 93% and was not associated with malaria prevalence.

Drug Resistance and Drug Treatment

Clinical resistance of P. falciparum parasites to chloroquine and to the combination antifolate drug pyrimethamine-sulfadoxine is a growing public health problem in Peru. In an epidemic characterized by limited population immunity, parasitologic resistance (persistence or reemergence of parasites) inevitably leads to clinical resistance (reemergence of malarial symptoms).

Multiple regional in vivo drug susceptibility testing for chloroquine (10% to 70% resistance) and pyrimethamine-sulfadoxine (10% to 63% resistance) has documented significant focal differences in resistance patterns (13-15). Three P. falciparum strains have converged on Loreto and Iquitos: (Brazilian-pyrimethamine-sulfadoxine and chloroquine, complete resistance; Loretana—pyrimethamine-sulfadoxine, variable resistance; chloroquine resistant; and Pastazan/coastal-chloroquine susceptible). These strains were likely introduced and disseminated in different ways (e.g., routine travel, illegal narcotrafficking), but the increased abundance of An. darlingi in Loreto has allowed them to thrive. The highest percentage of strains resistant to multiple drugs (both chloroquine and pyrimethamine- sulfadoxine— resistant) have been found in the border areas of Colonia Angamos on the Yavarí River, communities on the Blanco River, and in Santa Clara near Iquitos.

From July through November 1996, we performed in Iquitos two prospective studies of P. falciparum drug resistance in patients from periurban and rural areas in Loreto. Twenty-eight day in vivo drug susceptibility testing of P. falciparum to pyrimethamine-sulfadoxine was performed in 62 patients. The WHO in vitro microtest method was used to evaluate P. falciparum susceptibility to mefloquine, chloroquine, pyrimethamine-sulfadoxine, and quinine in pretreatment specimens from the same patients (16). Results showed significant pyrimethamine-sulfadoxine resistance in Loreto (31% in vivo and 67% in vitro) and documented in vitro resistance of chloroquine (78% resistance). P. falciparum parasites were susceptible to mefloquine and quinine (17).

A recent study in Loreto showed that in vivo resistance to pyrimethamine-sulfadoxine correlated with specific point mutations in P. falciparum dihydrofolate reductase at amino acid positions 51, 108, and 164, and dihydropteroate synthase mutations at positions 437, 540, and 581 (18). Further studies mapping the molecular resistance patterns of P. falciparum in Loreto are under way.

Figure 7

Thumbnail of Initial Plasmodium falciparum malaria treatment schemes in Loreto by district. Treatment efficiency* (cases cured/cohort number x 100) and efficacy** (cases cured/[cases cured + resistant cases] x 100) shown for each treatment scheme region. Treatment schemes: Primary-chloroquine; secondary-pyrimethamine-sulfadoxine; tertiary-quinine.

Figure 7. Initial Plasmodium falciparum malaria treatment schemes in Loreto by district. Treatment efficiency* (cases cured/cohort number x 100) and efficacy** (cases cured/[cases cured + resistant cases] x 100) shown for each treatment...

Malaria diagnosis and treatment are provided free of charge by the National Malaria Program. Focal treatment schemes have been designed depending on the local resistance patterns as documented by in vivo methods. Depending on local efficacy, first-line treatment of chloroquine, second-line of pyrimethamine-sulfadoxine, or third-line of quinine with clindamycin or tetracycline is administered (Figure 7). In 1998, treatment with mefloquine was initiated in selected communities with tertiary treatment schemes. All treatment lines include one dose of primaquine to eradicate P. falciparum gametocytes.

Control Schemes

Control strategies used by the Loreto Public Health Department and the National Malaria Program have included source, chemical, and biologic reduction strategies. Source reduction has consisted of community participation in identifying and filling in larval sites. Chemical control includes the use of insecticides in spatial fogging and domiciliary spraying and on bed nets. Pyrethroids (e.g., cyfluthrin) are used for fogging and domiciliary residual spraying. Since 1988, DDT has not been used in Loreto. An important challenge is that many Amazonian houses have open eaves and windows that allow mosquitoes to enter and exit without touching surfaces (except for a person's skin). An. darlingi behavioral studies have not yet been performed in Loreto to determine if the mosquitoes rest inside or outside after feeding. Larvaciding is performed with temephos (tetramethyl-thiodiphenylene phosphorothioate) placed at the surface of the larval breeding sites. Biologic control has been investigated with Bacillus sphaericus and thuringiensis in larval breeding pools. These bacteria have a short residual effect of 7 to 15 days in Loreto and require optimal conditions of shade for maximum efficacy.

Bed nets (mosquiteros) are ubiquitous in Loreto because of the many biting mosquito species. Local bed nets are made principally of cotton and sell for US$10 to $15. Insecticides were used in 1997 in the form of spraying (with cyfluthrin or deltamethrim) and impregnation (with either permethrim or deltamethrim) (19). Preliminary results show a decrease in malaria prevalence where insecticide-treated bed nets are in use.


Malaria began to reemerge in the upper Pastaza River and eastern border areas of Loreto in the early 1990s. P. falciparum exceeded P. vivax infections in the early part of the Loreto epidemic (1992-1993). The abundance of An. darlingi starting in 1993 set the stage for explosive growth of both P. falciparum and P. vivax transmission, especially around Iquitos, which had previously not been affected. The increase in the number of malaria cases and the erosion of P. vivax dominance over P. falciparum occurred in spite of governmental interventions (treatment schemes, fumigation, larviciding, and domiciliary spraying). While P. vivax infections decreased slightly from 1996 to 1997, P. falciparum cases continued to increase by 60%. However, the rate of increase in total malaria cases slowed—from a factor of 2.23 from 1995 to 1996 to 1.19 in 1996 to 1997. The predominance of malaria infection in men is likely the result of occupational risks (e.g., working in recently cleared areas, logging, and night fishing and hunting).

The death rate of epidemic P. falciparum in Loreto appears to be low. The oft-quoted 1% death rate for P. falciparum infection (3) has been reduced seven times, perhaps because of determined efforts at the regional and national levels to provide rapid and appropriate treatment in malarious areas. Future efforts are planned to continue and expand coverage to further reduce deaths due to P. falciparum.

Although positive correlations were found between malaria transmission periods and Amazon River level and rainfall, the negative correlation with temperature may not be as significant as in other areas where higher temperatures are positively correlated with malaria cases (20). The mean temperature in the rainy season in Loreto is still within the optimal range for anopheline development, and so the observed temperature correlation may have little biologic influence on malarial prevalence.

Analysis of environmental factors indicates that the optimal timing of malaria control activities in 1998 was 2 months before the rainy season. Integrated malaria control activities began in the dry season with the strategy to intervene before high transmission season. In 1998, slide-documented malaria cases decreased 30.7% to 84,059, with P. vivax cases decreasing 15.3% to 56,710 and P. falciparum cases decreasing 49.6% to 27,336. The longer dry season in 1997, apparently caused by El Niño, may have assisted the Loreto Public Health Department and National Malaria Program efforts to control malaria in 1998.

Danger exists for further expansion of malaria in Loreto, especially through expansion of An. darlingi (into areas where it is not yet the dominant vector) and evolution of P. falciparum drug resistance. Consequently, more malaria control research is needed, particularly environmental control program studies, Anopheles behavioral studies, drug resistance testing, and community bed net trials.

Dr. Javier Aramburú Guarda is chairman of Surveillance of Infectious Diseases, General Office of Epidemiology, Ministry of Health of Perú. His research focuses on antimalarial resistance, integrated malaria control, and malaria control policies.


We thank Ernesto Colán Bernal, Jorge Quintana Zurita, and Mercy Panduro Gaviria for technical assistance for the in vitro drug resistance studies, Henrry Echeandía Rossell for computer design, ernesto Berrocal Vilchez for entomologic coordination, Cristiam Carey Angeles and Carlos Calampa del Aguila for logistical support, and the workers at the Loreto Public Health Department for malaria control data. In memoriam Javier Benzaquen Garcia, a young Loreto malariologist (died in October 1998).

Support for this work was provided by a National Foundation for Infectious Diseases-Merck Postdoctoral Fellowship in Emerging Infectious Diseases (Dr. Witzig).


  1. Peru National Malaria Control Program Data. Lima, Peru: Instituto Nacional de Salud; 1997.
  2. Malaria Control Program. Malaria statistics 1992-1997. Iquitos, Loreto, Peru: Loreto Department of Public Health; 1998.
  3. Gilles HM, Warrell DA. Bruce-Chwatt's essential malariology, 3rd ed. London: Edward Arnold; 1993. p. 129,136.
  4. Status of malaria programs in the Americas: XLIV Report. Washington: Pan American Health Organization; 1996 Sep. Document No.: CD39/INF/2.
  5. Malaria: epidemiological data, 1990-1992. Geneva: World Health Organization; 1997. Available from: URL:
  6. Health conditions in the Americas. Vol. II. Geneva: World Health Organization; 1994 Scientific publication No.: 549.
  7. Root F. Studies on Brazilian mosquitoes. I. The anophelines of the Nyssorhynchus group. Am J Hyg. 1926;6:648717.
  8. Branquinho MS, Lagos CBT, Rocha RM, Natal D, Barata JMS, Cochrane AH, Anophelines in the state of Acre, Brazil, infected with Plasmodium falciparum, P. vivax, the variant P. vivax VK247 and P. malariae. Trans R Soc Trop Med Hyg. 1993;87:3914. DOIPubMed
  9. Need JT, Rogers EJ, Phillips IA, Falcon R, Fernandez R, Carbajal F, Mosquitos (Diptera: Culicidae) capture in the Iquitos area of Peru. J Med Entomol. 1993;30:6348.PubMed
  10. Fernandez R, Carbajal F, Quintana J, Chauca H, Watts DM. Presencia del A. (N) darlingi (Diptera: Culicidae), en alrededores de la ciudad de Iquitos, Loreto-Peru. Sociedad Peruana de Enfermedades Infecciosas y Tropicales. 1996;5:102.
  11. Calderón G, Fernández R, Valle J. Especies de la fauna anofelina, su distribución y algunas consideraciones sobre su abundancia e infectividad en el Perú. Revista Peruana de Epidemiología. 1995;8:523.
  12. Calderón G, Curaca A, Llancari J, Napán M, Sipán F. Distribución geográfica de los vectores de la malaria en el Perú. Revista Peruana de Medicina Tropical. 1974;2:8891.
  13. Chauca H, Quintana J. Evaluación in vivo de la respuesta de Plasmodium falciparum a la cloroquina en foco carretera Yurimaguas-Tarapoto (Región Loreto). Revista Peruana de Epidemiología. 1993;6:349.
  14. Colán E, Quintana J, Ferreli R, San Roman E, Rios R. Malaria por Plasmodium falciparum en la Amazonia Peruana. Revista de Farmacología y Terapéutica. 1993;3:116.
  15. Navitsky RC, Witzig RS, Quintana Zurita J, Rios M, Aramburú Guarda JS, Gilman RH, In vivo resistance of Plasmodium falciparum to pyrimethamine/sulfadoxine in children of the Amazon region of Peru. Am J Trop Med Hyg. 1997;57(Suppl):229.
  16. WHO. In vitro microtest (Mark II) for the assessment of the response of Plasmodium falciparum to chloroquine, mefloquine, quinine, sulfadoxine/pyrimethamine, and amodiaquine. Geneva: World Health Organization; 1990 Document No.: MAP/87.2:1-21.
  17. Panduro M, Colán E, Witzig R, Quintana J, Chávez R. Estudio in vitro e in vivo de la respuesta del P. falciparum a chloroquina, sulfadoxina/pirimetamina, quinina, y mefloquina en la zona periurbana y rural de Iquitos. Sociedad Peruana de Enfermedades Infecciosas y Tropicales. 1997;6:64.
  18. Kublin JG, Witzig RS, Shankar A, Quintana J, Aramburú J, Cortese JF, Molecular assays for surveillance of antifolate resistant malaria in Peru. Lancet. 1998;351:162930. DOIPubMed
  19. Huailu C, Wen Y, Wuanmin K, Chongyi L. Large-scale spraying of bednets to control mosquito vectors and malaria in Sichwan, China. Bull World Health Organ. 1995;73:3218.PubMed
  20. Freeman T, Bradley M. Temperature is predictive of severe malaria years in Zimbabwe. Trans R Soc Trop Med Hyg. 1996;90:232. DOIPubMed


Cite This Article

DOI: 10.3201/eid0502.990204

Table of Contents – Volume 5, Number 2—April 1999