Skip directly to local search Skip directly to A to Z list Skip directly to navigation Skip directly to site content Skip directly to page options
CDC Home

Volume 8, Number 5—May 2002

Dispatch

Phylogenetic Analysis of a Human Isolate from the 2000 Israel West Nile virus Epidemic

Thomas Briese*Comments to Author , Andrew Rambaut†, Melissa Pathmajeyan*, Jihad Bishara‡, Miriam Weinberger‡, Silvio Pitlik‡, and W. Ian Lipkin*
Author affiliations: *University of California at Irvine, Irvine, California, USA; †University of Oxford, Oxford, UK; ‡Rabin Medical Center–Beilinson Campus, Petah Tikva, Israel;

Main Article

Figure

Phylogenetic analysis of WNV-hISR2000 E gene sequence. Phylogenetic analysis of the sequences listed below was performed with PAUP (Phylogenetic analysis using parsimony) 4.0b8 (Sinaur Associates, Sunderland, MA). A neighbor-joining tree was constructed using maximum likelihood distances with the HKY85 model of substitution and allowing different rates of substitution at each codon position. Bootstrap values are the result of 1000 neighbor-joining replicates under this same model. Only relevant bootstrap values are shown. WNV-Eg101-1951 (human, H), AF260968; WNV-RUS-HP94-1963, AF237565; WNV-RUS-A1628-1967 (bird, B), AF237563; WNV-ISR-TL443-1952 (H), AF205881; WNV-RSA-H442, AF205880; WNV-Palestine-1998, V. Deubel unpub.data; WNV-RO96-1030-1996 (H), AF130363; WNV-FRA-PaH651-1965 (H), AF001560; WNV-ROM96(0334)-1996, AF208579; WNV-RUS-T1304; AF237566; WNV-ISR-99Goo-1999 (B), AY033391; WNV-ISR-99Gull-1999 (B), AY033390; WNV-ISR-97Goo1-1997 (B), AF380663; WNV-USA-NY99eqhs-1999 (equus, E), AF260967; WNV-USA-CT99-2741-1999 (mosquito, M), AF206518; WNV-USA-hNY1999-1999 (H), AF202541; WNV-USA-NY99Flamingo382-99-1999 (B), AF196835; WNV-ISR-IS98ST1-1998 (B), AY033389; WNV-ISR-00Eq1-2000 (E), AF380669; WNV-ISR-98Goo1-1998 (B), AF205882; WNV-ISR-00GooN-2000 (B), AF380665; WNV-RUS-ASTR986-1999 (H), AF237562; WNV-RO97-50-1996 (M), AF260969; WNV-RUS-VLG4-1999 (H), AF317203; WNV-KEN-KN3829-1998 (M), AF146082; WNV-ISR-00GooMaS-2000 (B), AF380667; WNV-ISR-00PigC-2000 (pig, P); WNV-SEN-ArD93548-1993 (M), AF001570; WNV-ISR-hISR2000-2000 (H), AF394217; WNV-CAR-HB6343-1989 (H), AF001558; WNV-ALG-ArDjanet-1968 (M), AF001567; WNV-SEN-AnD27875-1979 (primate, P), AF001569; WNV-CAR-ArB310-1967 (M), AF001566; WNV-I.C.-ArA3212-1981 (M), AF001561; KUNV-AUS-MRM61c-1960 (M), D00246; KUNV-AUS-Boort-1984 (E), AF196519; KUNV-AUS-P1553-1994 (M), AF196495; WNV-IND-G2266-1955 (M), AF196525; WNV-IND-804994-1980 (H), AF196526; WNV-IND-G16919-1955, AF205885; WNV-WENGLER, M12294; WNV-UGA-B956-1937 (H), AF394221; WNV-SEN-ArD78016-1990 (M), AF001556; WNV-UGA-Ent63134, AF001573; WNV-UGA-MP22-1959 (M), AF001562; WNV-RCA-AnB3507-1972 (B), AF001563; WNV-CAR-HB83P55-1983 (H), AF001557; WNV-RCA-ArB3573-1972 (M), AF001565; WNV-MAD-ArMg956-1986 (M), AF001564; WNV-KEN-Na1047 (M), AF001571; WNV-MAD-ArMg978-1988 (M), and AF001574.

Figure. Phylogenetic analysis of WNV-hISR2000 E gene sequence. Phylogenetic analysis of the sequences listed below was performed with PAUP (Phylogenetic analysis using parsimony) 4.0b8 (Sinaur Associates, Sunderland, MA). A neighbor-joining tree was constructed using maximum likelihood distances with the HKY85 model of substitution and allowing different rates of substitution at each codon position. Bootstrap values are the result of 1000 neighbor-joining replicates under this same model. Only relevant bootstrap values are shown. WNV-Eg101-1951 (human, H), AF260968; WNV-RUS-HP94-1963, AF237565; WNV-RUS-A1628-1967 (bird, B), AF237563; WNV-ISR-TL443-1952 (H), AF205881; WNV-RSA-H442, AF205880; WNV-Palestine-1998, V. Deubel unpub.data; WNV-RO96-1030-1996 (H), AF130363; WNV-FRA-PaH651-1965 (H), AF001560; WNV-ROM96(0334)-1996, AF208579; WNV-RUS-T1304; AF237566; WNV-ISR-99Goo-1999 (B), AY033391; WNV-ISR-99Gull-1999 (B), AY033390; WNV-ISR-97Goo1-1997 (B), AF380663; WNV-USA-NY99eqhs-1999 (equus, E), AF260967; WNV-USA-CT99-2741-1999 (mosquito, M), AF206518; WNV-USA-hNY1999-1999 (H), AF202541; WNV-USA-NY99Flamingo382-99-1999 (B), AF196835; WNV-ISR-IS98ST1-1998 (B), AY033389; WNV-ISR-00Eq1-2000 (E), AF380669; WNV-ISR-98Goo1-1998 (B), AF205882; WNV-ISR-00GooN-2000 (B), AF380665; WNV-RUS-ASTR986-1999 (H), AF237562; WNV-RO97-50-1996 (M), AF260969; WNV-RUS-VLG4-1999 (H), AF317203; WNV-KEN-KN3829-1998 (M), AF146082; WNV-ISR-00GooMaS-2000 (B), AF380667; WNV-ISR-00PigC-2000 (pig, P); WNV-SEN-ArD93548-1993 (M), AF001570; WNV-ISR-hISR2000-2000 (H), AF394217; WNV-CAR-HB6343-1989 (H), AF001558; WNV-ALG-ArDjanet-1968 (M), AF001567; WNV-SEN-AnD27875-1979 (primate, P), AF001569; WNV-CAR-ArB310-1967 (M), AF001566; WNV-I.C.-ArA3212-1981 (M), AF001561; KUNV-AUS-MRM61c-1960 (M), D00246; KUNV-AUS-Boort-1984 (E), AF196519; KUNV-AUS-P1553-1994 (M), AF196495; WNV-IND-G2266-1955 (M), AF196525; WNV-IND-804994-1980 (H), AF196526; WNV-IND-G16919-1955, AF205885; WNV-WENGLER, M12294; WNV-UGA-B956-1937 (H), AF394221; WNV-SEN-ArD78016-1990 (M), AF001556; WNV-UGA-Ent63134, AF001573; WNV-UGA-MP22-1959 (M), AF001562; WNV-RCA-AnB3507-1972 (B), AF001563; WNV-CAR-HB83P55-1983 (H), AF001557; WNV-RCA-ArB3573-1972 (M), AF001565; WNV-MAD-ArMg956-1986 (M), AF001564; WNV-KEN-Na1047 (M), AF001571; WNV-MAD-ArMg978-1988 (M), and AF001574.

Main Article

Top of Page

 

Past Issues

Select a Past Issue:

Art in Science - Selections from Emerging Infectious Diseases
Now available for order



CDC 24/7 – Saving Lives, Protecting People, Saving Money. Learn More About How CDC Works For You…

USA.gov: The U.S. Government's Official Web PortalDepartment of Health and Human Services
Centers for Disease Control and Prevention   1600 Clifton Rd. Atlanta, GA 30333, USA
800-CDC-INFO (800-232-4636) TTY: (888) 232-6348 - Contact CDC–INFO