Volume 22, Number 2—February 2016
Letter
Mycoplasma pneumoniae Monoclonal P1 Type 2c Outbreak, Russia, 2013
Table
City or region and specimen designation | Sample source | Patient age, y | Hospitalization status | Respiratory clinical syndrome | Date of collection | MLVA type† | MLVA type without MPN1‡ | PCR-RFLP type | Macrolide resistance genotype |
---|---|---|---|---|---|---|---|---|---|
Ozerniy | |||||||||
38795 | Throat swab | 12 | Inpatient | Pneumonia | 2013 Feb 15 | 53562 (S) | 3562 | 2c | Wild type |
38796 | Throat swab | 10 | Inpatient | Pneumonia | 2013 Feb 15 | 73562 (Y) | 3562 | 2c | Wild type |
38799 | Throat swab | 10 | Inpatient | Pneumonia | 2013 Feb 15 | 73563 | 3563 | 2c | Wild type |
38812 | Throat swab | 9 | Inpatient | Pneumonia | 2013 Feb 15 | 73562 (Y) | 3562 | 2c | Wild type |
38814 | Throat swab | 11 | Inpatient | Pneumonia | 2013 Feb 15 | 73562 (Y) | 3562 | 2c | Wild type |
38941 | Throat swab | 33 | Outpatient | Asymptomatic | 2013 Feb 20 | 73563 | 3563 | 2c | No amp |
38945 | Throat swab | 10 | Inpatient | Pneumonia | 2013 Feb 20 | 73563 | 3563 | 2c | No amp |
38946 | Throat swab | 10 | Inpatient | Pneumonia | 2013 Feb 20 | 73563 | 3563 | 2c | Wild type |
38960 | Throat swab | 33 | Outpatient | Asymptomatic | 2013 Feb 20 | 73563 | 3563 | 2c | Wild type |
38962 | Throat swab | 51 | Outpatient | Asymptomatic | 2013 Feb 20 | 73562 (Y) | 3562 | 2c | Wild type |
39042 | Throat swab | 9 | Inpatient | Pneumonia | 2013 Feb 25 | 73562 (Y) | 3562 | 2c | Wild type |
39048 | Throat swab | 64 | Outpatient | Asymptomatic | 2013 Feb 25 | 63562 (V) | 3562 | 2c | Wild type |
39293 |
Throat swab |
8 |
Inpatient |
Pneumonia |
2013 Mar 7 |
73562 (Y) |
3562 |
2c |
Wild type |
Duchovshina | |||||||||
43593 | Throat swab | 13 | Inpatient | Pneumonia | 2013 Oct 18 | 43562 (M) | 3562 | 2c | Wild type |
43596 | Throat swab | 15 | Outpatient | Pneumonia | 2013 Oct 18 | 43562 (M) | 3562 | 2c | Wild type |
43597 | Throat swab | 12 | Inpatient | Pneumonia | 2013 Oct 18 | 43562 (M) | 3562 | 2c | Wild type |
43692 | Throat swab | 5 | Inpatient | Pneumonia | 2013 Oct 22 | 43562 (M) | 3562 | 2c | Wild type |
43693 | Throat swab | 10 | Inpatient | Pneumonia | 2013 Oct 23 | 43562 (M) | 3562 | 2c | Wild type |
43694 | Throat swab | 9 | Inpatient | Pneumonia | 2013 Oct 22 | 43562 (M) | 3562 | 2c | Wild type |
43695 | Throat swab | 13 | Inpatient | Pneumonia | 2013 Oct 23 | 43562 (M) | 3562 | 2c | Wild type |
43804 | Throat swab | 9 | Inpatient | Pneumonia | 2013 Oct 27 | 43562 (M) | 3562 | 2c | Wild type |
43805 | Throat swab | 6 | Inpatient | Pneumonia | 2013 Oct 27 | 43562 (M) | 3562 | 2c | Wild type |
43806 | Throat swab | 14 | Inpatient | Pneumonia | 2013 Oct 27 | 43562 (M) | 3562 | 2c | Wild type |
43843 | Throat swab | 6 | Inpatient | Pneumonia | 2013 Oct 30 | 43562 (M) | 3562 | 2c | Wild type |
43888 | Throat swab | 58 | Outpatient | Pneumonia | 2013 Oct 31 | 43562 (M) | 3562 | 2c | Wild type |
43890 | Throat swab | 4 | Inpatient | Pneumonia | 2013 Oct 31 | 43562 (M) | 3562 | 2c | Wild type |
43919 | Throat swab | 41 | Outpatient | Pneumonia | 2013 Nov 1 | 43562 (M) | 3562 | 2c | Wild type |
43989 | Throat swab | 10 | Inpatient | Pneumonia | 2013 Nov 6 | 43562 (M) | 3562 | 2c | Wild type |
43990 | Throat swab | 13 | Inpatient | Pneumonia | 2013 Nov 6 | 43562 (M) | 3562 | 2c | Wild type |
43991 | Throat swab | 8 | Inpatient | Pneumonia | 2013 Nov 6 | 43562 (M) | 3562 | 2c | Wild type |
44174 | Throat swab | 10 | Inpatient | Pneumonia | 2013 Nov 14 | 43562 (M) | 3562 | 2c | Wild type |
44176 |
Throat swab |
8 |
Inpatient |
Pneumonia |
2013 Nov 14 |
43562 (M) |
3562 |
2c |
No amp |
Smolensk region | |||||||||
89 | Sputum | 17 | Inpatient | Pneumonia | 2006 Oct 24 | 64572 (X) | 4572 | 1 | Wild type |
95 | Sputum | 56 | Inpatient | Pneumonia | 2006 Oct 29 | 43562 (M) | 3562 | 2a | Wild type |
108–2 | Sputum | 19 | Inpatient | Pneumonia | 2006 Nov 3 | 34572 (J) | 4572 | 1 | Wild type |
122 | Sputum | 18 | Inpatient | Pneumonia | 2006 Nov 18 | 64572 (X) | 4572 | 1 | Wild type |
164 | Sputum | 39 | Inpatient | Pneumonia | 2007 Jan 25 | 34572 (J) | 4572 | 1 | Wild type |
169 | Sputum | 43 | Inpatient | Pneumonia | 2007 Feb 4 | 43562 (M) | 3562 | 2a | Wild type |
175 | Sputum | 38 | Inpatient | Pneumonia | 2007 Feb 10 | 43562 (M) | 3562 | 2a | Wild type |
186 | Sputum | 48 | Inpatient | Pneumonia | 2007 Feb 20 | 4--62§ | --62¶ | 2a | Wild type |
187 | Sputum | 36 | Inpatient | Pneumonia | 2007 Feb 20 | 33562(G) | 3562 | 2a | Wild type |
192 | Sputum | 36 | Inpatient | Pneumonia | 2007 Feb 20 | 43562 (M) | 3562 | 2a | Wild type |
191 | Sputum | 40 | Inpatient | Pneumonia | 2007 Feb 24 | 43562 (M) | 3562 | 2a | Wild type |
211 | Sputum | 43 | Inpatient | Pneumonia | 2007 Mar 21 | 43562 (M) | 3562 | 2a | Wild type |
230 | Sputum | 17 | Inpatient | Pneumonia | 2007 Apr 17 | 43562 (M) | 3562 | 2a | Wild type |
257 | Sputum | 21 | Inpatient | Pneumonia | 2007 Jul 17 | 43672 | 3672 | 1 | Wild type |
261 | Sputum | 21 | Inpatient | Pneumonia | 2007 Jul 20 | 43672 | 3672 | 1 | Wild type |
270 | Sputum | 19 | Inpatient | Pneumonia | 2007 Jul 30 | 34572 (J) | 4572 | 1 | Wild type |
271 | Sputum | 19 | Inpatient | Pneumonia | 2007 Jul 31 | 64572 (X) | 4572 | 1 | Wild type |
280 | Sputum | 19 | Inpatient | Pneumonia | 2007 Aug 14 | 64572 (X) | 4572 | 1 | Wild type |
293 | Sputum | 20 | Inpatient | Pneumonia | 2007 Sep 11 | 64572 (X) | 4572 | 1 | Wild type |
298 | Sputum | 19 | Inpatient | Pneumonia | 2007 Sep 18 | 74572 (Z) | 4572 | 1 | Wild type |
309 | Sputum | 36 | Inpatient | Pneumonia | 2007 Oct 02 | 23562 (B) | 3562 | 2a | Wild type |
310 | Sputum | 26 | Inpatient | Pneumonia | 2007 Oct 03 | 33562(G) | 3562 | 2a | Wild type |
313 | Sputum | 23 | Inpatient | Pneumonia | 2007 Oct 12 | 43562 (M) | 3562 | 2a | Wild type |
292 | Sputum | 17 | Inpatient | Pneumonia | 2007 Oct 22 | 33562(G) | 3562 | 2a | Wild type |
13 | Throat swab | 23 | Inpatient | Pneumonia | 2010 Feb 21 | 43562 (M) | 3562 | 2c | Wild type |
70 | Throat swab | 62 | Inpatient | Pneumonia | 2010 Mar 18 | 43562 (M) | 3562 | 2a | Wild type |
107 | Throat swab | 33 | Inpatient | Pneumonia | 2010 Mar 26 | 43562 (M) | 3562 | 2a | Wild type |
108–1 | Throat swab | 36 | Inpatient | Pneumonia | 2010 Mar 29 | 33562(G) | 3562 | 2c | Wild type |
212 | Throat swab | 67 | Inpatient | Pneumonia | 2010 Oct 15 | 24572 (E) | 4572 | 1 | Wild type |
*MLVA, multilocus variable-number tandem-repeat; no amp, no amplification with the real-time PCR used to detect 23S rRNA mutations associated with macrolide resistance (1); RFLP, restriction fragment length polymorphism. An expanded version of this table is available online at http://wwwnc.cdc.gov/EID/article/22/2/15-1349-T1.htm.
†The profiles are named according to a string of allele numbers in order of MPN1, MPN13, MPN14, MPN15, and MPN16 markers showing the number of repeats at each locus. When available, the naming according to Degrange et al. is shown in parentheses (1).
‡The profiles are named according to a string of allele numbers in order of MPN13, MPN14, MPN15 and MPN16 markers showing the number of repeats at each locus. The instable MPN1 marker (8) was removed.
§Only 3 of 5 loci were amplified. -, indicates no amplification at second and third loci.
¶Only 2 of 4 loci were amplified. -, indicates no amplification at first and second loci.
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