Volume 18, Number 4—April 2012
Dispatch
Characterization of Mycobacterium orygis as M. tuberculosis Complex Subspecies
Jakko van Ingen
, Zeaur Rahim, Arnout Mulder, Martin J. Boeree, Roxane Simeone, Roland Brosch, and Dick van Soolingen
, Zeaur Rahim, Arnout Mulder, Martin J. Boeree, Roxane Simeone, Roland Brosch, and Dick van SoolingenTable A1
Twenty-four locus variable number tandem repeat typing results in characterization of Mycobacterium orygis as M. tuberculosis complex subspecies*
| Strain | Variable number tandem repeat locus | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 580 | 2996 | 802 | 960 | 1644 | 3192 | 424 | 577 | 2165 | 2401 | 3690 | 4156 | 2163b | 1955 | 4052 | 154 | 2531 | 4348 | 2059 | 2687 | 3007 | 2347 | 2461 | 3171 | |
| 17263 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 17297 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 17783 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 17786 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 17788 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 17789 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 94–931 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 94–988 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 95–114 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 97–176 | 3 | 4 | 3 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 97–2150 | 3 | 4 | 2 | 9 | 4 | 4 | 2 | 6 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 00–1215 | 3 | 4 | 2 | 7 | 4 | 3 | 2 | 5 | 3 | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 1 | 1 | 3 | 3 | 2 | 3 |
| 01–2263 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 02–658 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 03–1265 | 3 | 4 | 2 | 7 | 4 | 3 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 07–775 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 07–1275 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 5 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 1 | 1 | 3 | 3 | 2 | 3 |
| 08–482 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 08–564 | 3 | 4 | 2 | 7 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 10–1561 | 3 | 4 | 2 | 6 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
| 10–1563 | 3 | 4 | 2 | 6 | 4 | 4 | 2 | 5 | x | 4 | 4 | 3 | x | 3 | 2 | 2 | 4 | 2 | 2 | 1 | 3 | 3 | 2 | 3 |
*x, unamplifiable. Boldface indicates deviations from the most frequently observed number of repeats.
