Volume 19, Number 9—September 2013
Research
Continued Evolution of West Nile Virus, Houston, Texas, USA, 2002–2012
Table 1
West Nile virus isolates described in sequence and phylogenetic analyses, Harris County , Texas, USA,1998–2012*
Strain | Map code† | Location | Zip code‡ | Source§ | Collection year | GenBank accession no. |
---|---|---|---|---|---|---|
IS-98 STD | – | Eilat, Israel | NA | White stork | 1998 | AF481864 |
NY99-flamingo382-99 | – | New York, NY, USA | NA | Chilean flamingo | 1999 | AF196835 |
Kuritz [TVP 8553] | – | Beaumont, TX, USA | NA | Human | 2002 | AY289214 |
TX114 | B1-1 | Harris Co., TX, USA | 77043 | Blue jay | 2002 | GU827998 |
TX 2002 1 | – | Harris Co., TX, USA | NA | Human | 2002 | DQ164198 |
TX 2002 2 | – | Harris Co., TX, USA | NA | Human | 2002 | DQ164205 |
TX1153 | B2-1 | Harris Co., TX, USA | 77077 | Mourning dove | 2003 | AY712945 |
TX1171 | B3-1 | Harris Co., TX, USA | 77030 | Blue jay | 2003 | AY712946 |
TX1175 | B4-3 | Harris Co., TX, USA | 77346 | Blue jay | 2003 | GU828000 |
TX1461 | – | Harris Co., TX, USA | NA | Avian | 2003 | AY712947 |
TX 2003 | – | Harris Co., TX, USA | NA | Human | 2003 | DQ164199 |
v4095 | M10-2 | Harris Co., TX, USA | 77093 | Culex quinquefasciatus | 2003 | GU828002 |
v4369 | M11-2 | Harris Co., TX, USA | 77039 | Cx. quinquefasciatus | 2003 | AY712948 |
v4380 | M12-2 | Harris Co., TX, USA | 77093 | Cx. quinquefasciatus | 2003 | GU828001 |
M12214 | M1-5 | Harris Co., TX, USA | 77020 | Cx. quinquefasciatus | 2005 | JF415914 |
TX5058 | B5 | Harris Co., TX, USA | 77057 | Blue jay | 2005 | JF415929 |
M6019 | M2-6 | Harris Co., TX, USA | 77026 | Cx. quinquefasciatus | 2006 | JF415930 |
TX5810 | B6-6 | Harris Co., TX, USA | 77345 | Common grackle | 2006 | JF415915 |
TX6276 | B7-10 | Harris Co., TX, USA | 77373 | Northern mockingbird | 2006 | JF415916 |
M19433 | M3-5 | Harris Co., TX, USA | 77020 | Cx. quinquefasciatus | 2007 | JF415919 |
TX6647 | B8-5 | Harris Co., TX, USA | 77084 | Blue jay | 2007 | JF415917 |
TX6747 | B9 | Harris Co., TX, USA | 77346 | Blue jay | 2007 | JF415918 |
TX7191 | B10 | Harris Co., TX, USA | 77005 | Blue jay | 2007 | JF415920 |
TX7558 | B11-5 | Harris Co., TX, USA | 77375 | Blue jay | 2008 | JF415921 |
M20122 | M4-4 | Harris Co., TX, USA | 77026 | Aedes albopictus | 2009 | JF415928 |
M20140 | M5-4 | Harris Co., TX, USA | 77021 | Ae. albopictus | 2009 | JF415926 |
M20141 | M6-4 | Harris Co., TX, USA | 77021 | Cx. quinquefasciatus | 2009 | JF415927 |
M37012 | M7-4 | Harris Co., TX, USA | 77021 | Cx. quinquefasciatus | 2009 | JF415922 |
M37906 | M8-4 | Harris Co., TX, USA | 77021 | Cx. quinquefasciatus | 2009 | JF415923 |
M38488 | M9-4 | Harris Co., TX, USA | 77004 | Ae. albopictus | 2009 | JF415925 |
TX7827 | B12-7 | Harris Co., TX, USA | 77060 | Blue jay | 2009 | JF415924 |
TX8092 | B13-7 | Harris Co., TX, USA | 77084 | House sparrow | 2010 | KC333374 |
TX8349 | B14-5 | Harris Co., TX, USA | 77016 | House sparrow | 2011 | KC333375 |
TX8546 | B15-9 | Harris Co., TX, USA | 77065 | Blue jay | 2012 | KC333376 |
TX8551 | B16-10 | Harris Co., TX, USA | 77449 | Blue jay | 2012 | KC333377 |
TX8559 | B17-9 | Harris Co., TX, USA | 77506 | Blue jay | 2012 | KC333378 |
TX8560 | B18-8 | Harris Co., TX, USA | 77062 | Blue jay | 2012 | KC333379 |
TX8562 | B19-10 | Harris Co., TX, USA | 77450 | Blue jay | 2012 | KC333380 |
TX8567 | B20-9 | Harris Co., TX, USA | 77065 | Blue jay | 2012 | KC333381 |
TX8571 | B21-8 | Harris Co., TX, USA | 77059 | Blue Jay | 2012 | KC333382 |
TX8572 | B22 | Harris Co., TX, USA | 77080 | Blue jay | 2012 | KC333383 |
TX8589 | B23-10 | Harris Co., TX, USA | 77049 | Loggerhead shrike | 2012 | KC333384 |
TX8590 | B24-10 | Harris Co., TX, USA | 77339 | Blue jay | 2012 | KC333385 |
TX8599 | B25-8 | Harris Co., TX, USA | 77058 | Blue jay | 2012 | KC333386 |
TX8604 | B26 | Harris Co., TX, USA | 77021 | House sparrow | 2012 | KC333387 |
TX AR12-1486 | – | Denton Co., TX, USA | NA | Cx. quinquefasciatus | 2012 | KC711057 |
TX AR12-1648 | – | Collin Co., TX, USA | NA | Cx. quinquefasciatus | 2012 | KC711058 |
TX AR12-10674 | – | Collin Co., TX, USA | NA | Cx. restuans | 2012 | KC711059 |
*Strains sequenced in this study are indicated in boldface. Co., county.
†Map code designations include B (bird) and M (mosquito) for isolates collected in Harris County, TX, with phylogenetic relationships (groups 1–10) indicated after the hyphen (see Figure 1). –, isolates collected outside Harris County, Texas, that have no known geographic collection information.
‡Zip codes indicated for region of isolate collection within Harris County, TX (see Figure 1). NA, not available.
§Mosquito (Culex spp.) isolates were collected from mosquito pools.
1These authors contributed equally to this article.