Volume 11, Number 10—October 2005
Research
Evolution of H5N1 Avian Influenza Viruses in Asia
Table A1
Influenza Sequence Database accession numbers of influenza virus genes analyzed*
| Influenza strain | Clade | Hemagglutinin | Neuraminidase | M |
|---|---|---|---|---|
| A/Vietnam/HN30408/05 | 1 | ISDN119678 | ISDN119679 | NA† |
| A/Vietnam/JP14/05 | 1 | ISDN117778 | ISDN117783 | NA |
| A/Vietnam/JPHN30321/05 | 1 | ISDN118371 | NA | NA |
| A/Vietnam/JP4207/05 | 1 | ISDN117777 | ISDN117782 | NA |
| A/Cambodia/JP52a/2005 | 1 | ISDN121986 | ISDN122818 | NA |
| A/Chicken/Cambodia/013LC1b/2005 | 1 | ISDN122143 | ISDN122148 | NA |
| A/Chicken/Cambodia/013LC2b/2005 | 1 | NA | ISDN122151 | NA |
| A/Chicken/Cambodia/022LC3b/2005 | 1 | ISDN122146 | ISDN122152 | NA |
| A/Goose/Cambodia/022b/2005 | 1 | ISDN122147 | ISDN122153 | NA |
| A/Vietnam/JP178/04 | 1 | ISDN69608 | ISDN69610 | AF255363 |
| A/Vietnam/1194/2004 | 1 | ISDN38686 | ISDN38703 | ISDN39957 |
| A/Vietnam/1203/2004 | 1 | ISDN38687 | ISDN38704 | ISDN39958 |
| A/Thailand/16/2004 | 1 | ISDN40341 | ISDN48790 | ISDN45755 |
| A/Vietnam/3062/2004 | 1 | AY651336 | AY651448 | NA |
| A/Vietnam/3212/2004 | 1 | ISDN40278 | NA | NA |
| A/Thailand/Suphanburi/83/2004 | 1 | ISDN40917 | ISDN48792 | ISDN111182 |
| A/Thailand/Kan353/2004 | 1 | ISDN40918 | ISDN48791 | 1SDN111183 |
| A/Thailand/Chaiyaphum/622/2004 | 1 | ISDN49460 | ISDN48793 | ISDN111184 |
| A/Chicken/Thailand/2/2004 | 1 | ISDN49021 | ISDN49267 | ISDN49264 |
| A/Prachinburi/6231/2004 | 1 | ISDN110940 | ISDN110939 | ISDN111185 |
| A/Chicken/Malaysia/5854/2004 | 1 | ISDN80767 | ISDN80771 | ISDN80770 |
| A/Chicken/Vietnam/1/2004 | 1 | ISDN40909 | ISDN48796 | ISDN111226 |
| A/Duck/Vietnam/NCVD1/2002 | – | ISDN38689 | ISDN38697 | ISDN39960 |
| A/Chicken/Vietnam/NCVD8/2003 | – | ISDN40326 | ISDN38706 | ISDN39967 |
| A/Chicken/Laos/7191/2004 | 1 | ISDN40922 | ISDN48817 | ISDN111227 |
| A/Chicken/Laos/7192/2004 | 1 | ISDN40923 | NA | NA |
| A/Goose/Cambodia/28/2004 | 1 | ISDN49121 | ISDN49130 | ISDN49144 |
| A/Chicken/ Cambodia/7/2004 | 1 | ISDN49117 | NA | NA |
| A/Duck/Hong Kong/821/2002 | 1´ | AY575874 | ISDN38794 | AY575898 |
| A/Hong Kong/213/2003 | 1´ | ISDN38262 | ISDN48789 | AY575894 |
| A/Chicken/Guangxi/12/2004 | 2 | ISDN48980 | ISDN48982 | ISDN48983 |
| A/Duck/Guangxi/13/2004 | 2 | ISDN48989 | ISDN48987 | ISDN48986 |
| A/Duck/Hunan/15/2004 | 2 | ISDN48957 | ISDN48958 | ISDN48968 |
| A/Chicken/Indonesia/7/2003 | 2 | ISDN111351 | ISDN111353 | ISDN111355 |
| A/Chicken/Indonesia/11/2003 | 2 | ISDN111352 | ISDN111354 | ISDN111356 |
| A/Chicken/Yamaguchi/7/2004 | 2 | ISDN49016 | ISDN49017 | ISDN49085 |
| A/Chicken/Korea/ES/2003 | 2 | ISDN40921 | ISDN38694 | ISDN45748 |
| A/Chicken/Hong Kong/YU324/03 | 2 | AY651358 | NA | NA |
| A/Chicken/Hong Kong/YU35703 | 2 | NA | ISDN38805 | ISDN38768 |
| A/Duck/China/E319-2/2003 | 2 | AY518362 | AY518363 | AY518361 |
| A/Chicken/Hubei/14/2004 | – | ISDN48972 | ISDN48973 | ISDN48975 |
| A/ Teal/Hong Kong/2978/2002 | – | AY651352 | ISDN38789 | AY651417 |
| A/Goose/Vietnam/113/2001 | – | ISDN38260 | ISDN48794 | ISDN117743 |
| A/Duck/Hong Kong/380.5/2001 | – | AY075033 | AY075034 | AY075035 |
| A/Duck meat/Anyang/AVL-1/2001 | – | AF468837 | AF468838 | AF468843 |
| A/Quail/Hong Kong/SF550/2000 | 3 | NA | AJ410561 | AJ410571 |
| A/Hong Kong/156/97 | 3 | AF460880 | AF036357 | AF036358 |
| A/Hong Kong/483/97 | 3 | AF460970 | AF102668 | AF255367 |
| A/Hong Kong/97/98 | 3 | AF102676 | AF102661 | AF255374 |
| A/Aquatic bird/Hong Kong/M603/98 | NA | NA | AF098551 | AF250486 |
| A/Chicken/Hong Kong/728/97 | 3 | AF046099 | NA | NA |
| A/Chicken/220/97 | 3 | AF046080 | NA | NA |
| A/Goose/Guangdong/1/96 | 3 | AF144305 | AF144304 | AF144306 |
| A/Hong Kong/1073/99 | NA | NA | NA | Submit |
*Virus names shown in boldface were used to prepare antiserum for use in antigenic characterization (Table 3). NA, not applicable.
†ISDN numbers are found in the Los Alamos National Laboratory Influenza Sequence Database (available at http://apollo.lanl.gov); others are in Genbank (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Nucleotide).
1Members of the World Health Organization Global Influenza Program and collaborating laboratories: Jean-Thierry Aubin, Saliha Azebi, Amanda Balish, Jill Banks, Niranjan Bhat, Rick A. Bright, Ian Brown, Philippe Buchy, Ana-Maria Burguiere, Hua-lan Chen, Peter Cheng, Nancy J. Cox, Alice Crosier, Aaron Curns, Frédérique Cuvelier, Guohua Deng, Julia Desheva, Stéphanie Desvaux, Nguyen Hong Diep, Ruben O. Donis, Alan Douglas, Scott F. Dowell, Nguyen Tien Dung, Lindsay Edwards, Keiji Fukuda, Rebecca Garten, Elena Govorkova, Victoria Gregory, Alan Hampson, Nguyen Thi Hong Hanh, Scott Harper, Alan Hay, Erich Hoffmann, Diane Hulse, Masaki Imai, Shigeyuki Itamura, Samadhan Jadhao, Patricia Jeannin, Chun Kang, Jackie Katz, Jae-Hong Kim, Alexander Klimov, Yong-kuk Kwon, Chang-Won Lee, Phuong Song Lien, Yanbing Li, Wilina Lim, Yi Pu Lin, Stephen Lindstom, LaMorris Loftin, Jan Mabry, Le Quynh Mai, Taronna Maines, Jean-Claude Manuguerra, Masaji Mase, Yumi Matsuoka, Margaret McCarron, Marie-Jo Medina, Doan Nguyen, Ai Ninomiya, Masatsugu Obuchi, Takato Odagiri, Malik Peiris, Michael L. Perdue, Jean-Marc Reynes, James Robertson, Claudine Rousseaux, Takehiko Saito, Somchai Sangkitporn, Michael Shaw, James M. Simmerman, M. Slomka, Catherine Smith, San Sorn, Erica Spackman, Klaus Stöhr, David L. Suarez, Haan Woo Sung, David E Swayne, Maryse Tardy-Panit, Masato Tashiro, Pranee Thawatsupha, Terrence Tumpey, Timothy Uyeki, Phan Van Tu, Sylvie van der Werf, Sirenda Vong, Richard Webby, Robert Webster, John Wood, Xiyan Xu, Guan Yi, and Wenqing Zhang. For author affiliations, please Download PDF (37 KB, 2 pages).