Volume 14, Number 12—December 2008
Dispatch
Mycobacterium bovis Strains Causing Smear-Positive Human Tuberculosis, Southwest Ireland
Table 2
Molecular characteristics of strains and clinical and demographic parameters of 11 patients from whom Mycobacterium bovis was isolated, southwest Ireland, 1998–2006*
Study no. | Spoligotype | SpolDB4† | Mbovis. org‡ | Other name§ | VNTR pattern¶ | Patient data |
||
---|---|---|---|---|---|---|---|---|
Sex/ age, y | Sample site | Sputum smear | ||||||
HB002 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | ST683 | SB0140 | A1 | 4-11-4-7-5- 1-5-8-3-2 | F/81 | Sputum | + |
HB008 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | ST683 | SB0140 | A1 | 3-10-4-5-5- 1-5-8-3-4 | F/86 | Sputum | – |
HB010 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | ST683 | SB0140 | A1 | 4-3-4-7-5- 1-5-8-3-4 | F/33 | Sputum | + |
HB011 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■□■■■■■□□□□□ | ST680 | SB0139 | NA | 4-3-4-7-3- 1-5-8-3-4 | F/29 | Sputum | + |
HB012 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■□■■■■■□□□□□ | ST680 | SB0139 | NA | 4-10-4-7-4- 1-5-8-3-4 | M/62 | Sputum | + |
HB006 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■□■■■□□□□□ | ND | SB1186 | NA | 4-11-4-5-5- 2-5-9-4-4 | M/60 | Urine | NA |
HB007 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | ND | SB1047 | NA | 4-10-3-7-7- 2-4-x-4-2 | F/74 | Neck abscess | NA |
HB003 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■□□■■■■□□□□□ | ST679 | SB0142 | D1 | 3-11-4-7-5- 1-6-8-3-4 | M/37 | Spinal disc aspirate | NA |
HB009 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■□■□■□□□□□ | ND | SB1187 | NA | 4-11-4-7-5- 2-5-10-4-4 | F/80 | Sputum | + |
HB001 | ■■□■■■■■□■□■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | ST691 | SB130 | A2 | 2-11-3-7-5- 2-3-8-2-3 | M/16 | Sputum | + |
HB005 | ■■□■■■■■□■□■■■■□■■■□□■■■■■■■■■■■■■■■■■□□□□□ | ND | SB1185 | NA | 4-10-1-4-5- 2-6-11-7-4 | M/68 | Testis biopsy sample | NA |
*VNTR, variable number tandem repeats; +, smear positive by auramine and Ziehl-Neelsen stains; −, smear negative by auramine and Ziehl-Neelsen stains; NA, not applicable; ND, not described; x, not determined.
†Spoligotype designation as described in the SpolDB4 database (www.pasteur-guadeloupe.fr/tb).
‡Spoligotype assignment as described in the Mbovis.org database (www.mbovis.org).
§Spoligotype assignment (11).
¶VNTR profile based on a 10-loci scheme for M. bovis strains from Ireland in this order: QUB1895, QUB11a, QUB11b, ETR-A, ETR-B, MIRU 24, MIRU 26, QUB 3232, QUB 3336, and QUB26 (8).
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