Skip directly to site content Skip directly to page options Skip directly to A-Z link Skip directly to A-Z link Skip directly to A-Z link
Volume 18, Number 11—November 2012
Research

Phylogeography of Dengue Virus Serotype 4, Brazil, 2010–2011

Marcio Roberto Teixeira Nunes, Nuno Rodrigues Faria, Helena Baldez Vasconcelos, Daniele Barbosa de Almeida Medeiros, Clayton Pereira Silva de Lima, Valéria Lima Carvalho, Eliana Vieira Pinto da Silva, Jedson Ferreira Cardoso, Edivaldo Costa Sousa, Keley Nascimento Barbosa Nunes, Sueli Guerreiro Rodrigues, Ana Barroso Abecasis, Marc A. Suchard, Philippe Lemey, and Pedro Fernando da Costa VasconcelosComments to Author 
Author affiliations: Instituto Evandro Chagas, Ananindeua, Brazil (M.R.T. Nunes, H. Baldez Vasconcelos, D. Barbosa de Almeida Medeiros, C. Pereira Silva de Lima, V. Lima Carvalho, E. Vieira Pinto da Silva, J. Ferreira Cardoso, E. Costa Sousa Jr, K.N. Barbosa Nunes, S.G. Rodrigues, P.F. da Costa Vasconcelos); KU Leuven, Leuven, Belgium (N. Rodrigues Faria, P. Lemey); Universidade Nova de Lisboa, Lisbon, Portugal (A. Barroso Abecasis); University of California, Los Angeles, California, USA (M.A. Suchard); and Universidade do Estado do Pará, Belém, Brazil (P.F. da Costa Vasconcelos)

Main Article

Figure 3

Overview of spatiotemporal dispersal of dengue virus type 4 (DENV-4) from Southeast (SE) Asia to the Caribbean region and then to South America. Links between geographic locations represent phylogeny branches of the full genome maximum clade credibility tree, as projected by using SPREAD software (20). The blue-red gradient is coded to the arrows and depicts the relative time that has elapsed since the earliest inferred viral migration out of Southeast Asia (i.e., 1978, 95% Bayesian credible int

Figure 3. . . Overview of spatiotemporal dispersal of dengue virus type 4 (DENV-4) from Southeast (SE) Asia to the Caribbean region and then to South America. Links between geographic locations represent phylogeny branches of the full genome maximum clade credibility tree, as projected by using SPREAD software (20). The blue-red gradient is coded to the arrows and depicts the relative time that has elapsed since the earliest inferred viral migration out of Southeast Asia (i.e., 1978, 95% Bayesian credible interval 1977–1980). Introductions are numbered as in Figure 1. Green indicates the presence of DENV-4 where complete genomic sequence data were available; yellow indicates sampled countries where complete genomic sequence data were available; gray, indicates no genomic data available; and circles indicate sampled locations and are colored according to the earliest migration that was detected from the sink location. RO, Roraima State; AMA, Amazonas State.

Main Article

References
  1. Gubler  DJ. Dengue and dengue hemorrhagic fever: its history and resurgence as a global public health problem. In: Gubler DJ, Kuno G, eds. Dengue and dengue hemorrhagic Fever. New York: CAB International; 1997. p. 1–22.
  2. Gibbons  RV, Vaughn  DW. Dengue: an escalating problem. BMJ. 2002;324:1563–6. DOIPubMedGoogle Scholar
  3. Lindbäck  H, Lindbäck  J, Tegnell  A, Janzon  R, Vene  S, Ekdahl  K. Dengue fever in travelers to the tropics, 1998 and 1999. Emerg Infect Dis. 2003;9:438–42. DOIPubMedGoogle Scholar
  4. World Health Organization. Dengue fever and dengue hemorrhagic fever. Geneva: the Organization; 2009.
  5. Ministério da Saúde/Secretara de Vigilância em Saúde MS/SVS. Dengue cases Technical report; 2009 [in Portuguese] [cited 2011 Dec 17]. http://portal.saude.gov.br/portal/arquivos/pdf/boletim_dengue_informe11maio.pdf
  6. Teixeira  MG, Barreto  ML, Costa  MCN, Ferreira  LDA, Vasconcelos  PFC, Cairncross  S. Dynamics of dengue virus circulation: a silent epidemic in a complex urban área. Trop Med Int Health. 2002;7:757–62. DOIPubMedGoogle Scholar
  7. Dussart  P, Baril  L, Petit  L, Beniguel  L, Quang  LC, Ly  S, Clinical and virological study of dengue cases and the members of their households: the multinational DENFRAME project. PLoS Negl Trop Dis. 2012;6:e1482. DOIPubMedGoogle Scholar
  8. Temporão  JG, Penna  GO, Carmo  EH, Coelho  GE, do Socorro Silva Azevedo  R, Teixeira Nunes  MR, Dengue virus serotype 4, Roraima State, Brazil. Emerg Infect Dis. 2011;17:938–40. DOIPubMedGoogle Scholar
  9. Osanai  CH, Travassos da Rosa  AP, Tang  AT, do Amaral  RS, Passos  AD, Tauil  PL. Dengue outbreak in Boa Vista, Roraima [in Portuguese]. Rev Inst Med Trop Sao Paulo. 1983;25:53–4.PubMedGoogle Scholar
  10. Ministério da Saúde/Secretaria de Vigilância em Saúde MS/SVS. Sempre é hora de combater a dengue [cited 2011 Dec 17]. http://www.combatadengue.com.br/
  11. Margulies  M, Egholm  M, Altman  WE, Attiya  S, Bader  JS, Bemben  LA, Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005;437:376–80.PubMedGoogle Scholar
  12. Katoh  K, Kuma  K, Toh  T, Miyata  T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005;33:511–8. DOIPubMedGoogle Scholar
  13. Drummond  AJ, Suchard  MA, Xie  D, Rambaut  A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 2012;29:1969–73. DOIPubMedGoogle Scholar
  14. Bruen  TC, Philippe  H, Bryant  D. A simple and robust statistical test for detecting the presence of recombination. Genetics. 2006;172:2665–81. DOIPubMedGoogle Scholar
  15. Huson  DH, Bryant  D. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 2006;23:254–67. DOIPubMedGoogle Scholar
  16. Edwards  CJ, Suchard  MA, Lemey  P, Welch  JJ, Barnes  I, Fulton  TL, Ancient hybridization and an Irish origin for the modern polar bear matriline. Curr Biol. 2011;21:1251–8. DOIPubMedGoogle Scholar
  17. Lemey  P, Rambaut  A, Drummond  AJ, Suchard  MA. Bayesian phylogeography finds its roots. PLOS Comput Biol. 2009;5:e1000520. DOIPubMedGoogle Scholar
  18. Minin  VN, Suchard  MA. Counting labeled transitions in continuous-time Markov models of evolution. J Math Biol. 2008;56:391–412. DOIPubMedGoogle Scholar
  19. Drummond  AJ, Ho  SY, Phillips  MJ, Rambaut  A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006;4:e88. DOIPubMedGoogle Scholar
  20. Bielejec  F, Rambaut  A, Suchard  MA, Lemey  P. SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics. 2011;27:2910–2. DOIPubMedGoogle Scholar
  21. Talbi  C, Lemey  P, Suchard  MA, Abdelatif  E, Elharrak  M, Nourlil  J, Phylodynamics and human-mediated dispersal of a zoonotic virus. PLoS Pathog. 2010;6:e1001166. DOIPubMedGoogle Scholar
  22. O’Brien  JD, Minin  VN, Suchard  MA. Learning to count: robust estimates for labeled distances between molecular sequences. Mol Biol Evol. 2009;26:801–14. DOIPubMedGoogle Scholar
  23. Allicock  OM, Lemey  P, Tatem  AJ, Pybus  OG, Bennett  SN, Mueller  BA, Phylogeography and population dynamics of dengue viruses in the Americas. Mol Biol Evol. 2012;29:1533–43. DOIPubMedGoogle Scholar
  24. Centers for Disease Control and Prevention. Dengue type 4 infections in US travelers to the Caribbean. MMWR Morb Mortal Wkly Rep. 1981;30:249–50.PubMedGoogle Scholar
  25. Forshey  BM, Morrison  AC, Cruz  C, Rocha  C, Vilcarromero  S, Guevara  C, Dengue virus serotype 4, northeastern Peru, 2008. Emerg Infect Dis. 2009;15:1815–8. DOIPubMedGoogle Scholar
  26. Fernández  J, Vera  L, Tognarelli  J, Fasce  R, Araya  P, Villagra  E, Detection of dengue virus type 4 in Easter Island, Chile. Arch Virol. 2011;156:1865–8. DOIPubMedGoogle Scholar
  27. Nogueira  RM, Eppinghaus  AL. Dengue virus type 4 arrives in the state of Rio de Janeiro: a challenge for epidemiological surveillance and control. Mem Inst Oswaldo Cruz. 2011;106:255–6.PubMedGoogle Scholar
  28. Shu  PY, Su  CL, Liao  TL, Yang  CF, Chang  SF, Lin  CC, Molecular characterization of dengue viruses imported into Taiwan during 2003–2007: geographic distribution and genotype shift. Am J Trop Med Hyg. 2009;80:1039–46.PubMedGoogle Scholar
  29. Lanciotti  RS, Gubler  DJ, Trent  DW. Molecular evolution and phylogeny of dengue-4 viruses. J Gen Virol. 1997;78:2279–84.PubMedGoogle Scholar
  30. Dussart  P, Lavergne  A, Lagathu  G, Lacoste  V, Martial  J, Morvan  J, Reemergence of dengue virus type 4, French Antilles and French Guiana, 2004–2005. Emerg Infect Dis. 2006;12:1748–51. DOIPubMedGoogle Scholar
  31. de Souza  RP, Rocco  IM, Maeda  AY, Spenassatto  C, Bisordi  I, Suzuki  A, Dengue virus type 4 phylogenetics in Brazil 2011: looking beyond the veil. PLoS Negl Trop Dis. 2011;5:e1439. DOIPubMedGoogle Scholar
  32. Holmes  EC. The evolutionary history and phylogeography of human viruses. Annu Rev Microbiol. 2008;62:307–28. DOIPubMedGoogle Scholar
  33. Rambaut  A, Pybus  OG, Nelson  MI, Viboud  C, Taubenberger  JK, Holmes  EC. The genomic and epidemiological dynamics of human influenza A virus. Nature. 2008;453:615–9. DOIPubMedGoogle Scholar

Main Article

Page created: October 01, 2012
Page updated: October 01, 2012
Page reviewed: October 01, 2012
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
file_external