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Volume 24, Number 6—June 2018
Research

Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough

Valérie Bouchez, Julien Guglielmini, Mélody Dazas, Annie Landier, Julie Toubiana, Sophie Guillot, Alexis Criscuolo, and Sylvain BrisseComments to Author 
Author affiliations: Institut Pasteur, Paris, France

Main Article

Figure 1

Maximum-likelihood phylogenetic tree for Bordetella pertussis isolates based on the concatenated multiple sequence alignments of 2,038 core genome multilocus sequence typing loci. The tree was rooted on the Tohama reference isolate (GenBank accession no. NC_002929). Only branch support values >50 are labeled (bootstrap/aLRT-SH). Column 1 to the right of the isolates’ names shows colors indicating the intrafamilial groups or groups of multiple isolates from single patients (corresponding to co

Figure 1. Maximum-likelihood phylogenetic tree for Bordetella pertussis isolates based on the concatenated multiple sequence alignments of 2,038 core genome multilocus sequence typing loci. The tree was rooted on the Tohama reference isolate (GenBank accession no. NC_002929). Only branch support values >50 are labeled (bootstrap/aLRT-SH). Column 1 to the right of the isolates’ names shows colors indicating the intrafamilial groups or groups of multiple isolates from single patients (corresponding to colors shown in inner circle of Figure 2). Column 2 shows pulsed-field gel electrophoresis types (French nomenclature; white, IVα; gray, IVβ; black, IVγ). Column 3 shows multilocus variable-number tandem-repeat analysis types. Scale bar indicates nucleotide substitutions per site.

Main Article

Page created: May 17, 2018
Page updated: May 17, 2018
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