Whole-Genome Sequencing of Salmonella Mississippi and Typhimurium Definitive Type 160, Australia and New Zealand
Laura Ford, Danielle Ingle, Kathryn Glass, Mark Veitch, Deborah A. Williamson, Michelle Harlock, Joy Gregory, Russell Stafford, Nigel French, Samuel Bloomfield, Zoe Grange, Mary Lou Conway, and Martyn D. Kirk
Author affiliations: The Australian National University, Acton, Australian Capital Territory, Australia (L. Ford, D. Ingle, K. Glass, M.D. Kirk); The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (D. Ingle, D.A. Williamson); Department of Health, Hobart, Tasmania, Australia (M. Veitch, M. Harlock); Victorian Department of Health and Human Services, Melbourne (J. Gregory); Queensland Department of Health, Brisbane, Queensland, Australia (R. Stafford); New Zealand Food Safety Science and Research Centre, Manawatu-Wanganui, New Zealand (N. French); Massey University, Manawatu-Wanganui (N. French); Quadram Institute, Norwich, UK (S. Bloomfield); University of California Davis–Davis, California, USA (Z. Grange); Department of Primary Industries, Parks, Water and Environment, Hobart (M.L. Conway)
Figure 5. Maximum-likelihood phylogeny of 198 sequenced Salmonella enterica serovar Typhimurium definitive type 160 isolates from Australia and New Zealand and reference isolates, inferred from 2,203 core single-nucleotide polymorphisms, Australia and New Zealand. Nodes are labeled with isolate type and isolation year. All Australian isolates are from Tasmania unless specified otherwise. Figure created with iTOL (https://itol.embl.de). Scale bar indicates nucleotide substitutions per site. *Specimens from the same person. †Investigated as part of an epidemiologic cluster. ‡Acquired in New South Wales.
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