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Volume 26, Number 10—October 2020
Dispatch

Seoul Orthohantavirus in Wild Black Rats, Senegal, 2012–2013

Moussa M. DiagneComments to Author , Idrissa Dieng, Laurent Granjon, Héloïse Lucaccioni, Abdourahmane Sow, Oumar Ndiaye, Martin Faye, Khalilou Bâ, Yamar Bâ, Mamoudou Diallo, Oumar Faye, Jean-Marc Duplantier, Mawlouth Diallo, Pascal Handschumacher, Ousmane Faye, and Amadou A. Sall
Author affiliations: Institut Pasteur, Dakar, Senegal (M.M. Diagne, I. Dieng, A. Sow, O. Ndiaye, M. Faye, Y. Bâ, Oum. Faye, Maw. Diallo, Ous. Faye, A.A. Sall); Centre de Gestion des Populations, Institut de Recherche pour le Développement, Montpellier, France (L. Granjon, J.-M. Duplantier); Université Paris Nanterre, Nanterre, France (H. Lucaccioni); Institut de recherche pour le développement Senegal, Dakar (K. Bâ, Mam. Diallo); Sciences Economiques & Sociales de la Santé & Traitement de l’Information Médicale, Marseille, France (P. Handschumacher); Aix Marseille University, Marseille (P. Handschumacher); Institut National de la Santé et de la Recherche Médicale, Marseille (P. Handschumacher)

Main Article

Figure 1

Phylogenetic analysis of Seoul orthohantavirus strains from black rats (Rattus rattus [family Murinae]; boldface) and reference sequences, Senegal, 2012–2013. Phylogenetic trees were generated by the maximum-likelihood method using the transition plus invariate sites plus gamma 4 model of the small segment (266 nt) (A) and the large segment (347 nt) (B). The numbers at each node are bootstrap probabilities (>90%) as determined for 1,000 iterations. GenBank numbers are indicated for reference

Figure 1. Phylogenetic analysis of Seoul orthohantavirus strains from black rats (Rattus rattus [family Murinae]; boldface) and reference sequences, Senegal, 2012–2013. Phylogenetic trees were generated by the maximum-likelihood method using the transition plus invariate sites plus gamma 4 model of the small segment (266 nt) (A) and the large segment (347 nt) (B). The numbers at each node are bootstrap probabilities (>90%) as determined for 1,000 iterations. GenBank numbers are indicated for reference sequences. Scale bars indicate 0.01 substitutions per nucleotide (A) and 0.1 substitutions per nucleotide (B).

Main Article

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Page updated: September 17, 2020
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