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Volume 27, Number 9—September 2021
Dispatch

Transmission of SARS-CoV-2 from Human to Domestic Ferret

Jožko RačnikComments to Author , Ana Kočevar, Brigita Slavec, Miša Korva, Katarina Resman Rus, Samo Zakotnik, Tomaž Mark Zorec, Mario Poljak, Milan Matko, Olga Zorman Rojs, and Tatjana Avšič Županc
Author affiliations: University of Ljubljana Faculty of Veterinary Medicine, Ljubljana, Slovenia (J. Račnik, B. Slavec, O. Zorman Rojs); Toplica Veterinary Hospital, Topolšica, Slovenia (A. Kočevar, M. Matko); University of Ljubljana Faculty of Medicine, Ljubljana (M. Korva, K. Resman Rus, S. Zakotnik, T.M. Zorec, M. Poljak, T. Avšič Županc)

Main Article

Figure 1

Phylogenetic sequence context consisted of high-quality complete severe acute respiratory syndrome coronavirus 2 genome sequences from a domestic ferret, Slovenia, corresponding to Pango lineage B.1.258. The context sequences were downloaded from GISAID (https://www.gisaid.org) and subsampled to 62 sequences and National Center for Biotechnology Information reference sequence NC_045512.2. The phylogenetic reconstruction using a general time-reversible plus F plus R4 substitution model was built in Figtree (Evomics, http://evomics.org) with 1,000 bootstrap replicates. The reference sequence was used as an outgroup to root the phylogenetic tree. GISAID accession numbers and isolation dates are provided. Scale bar indicates substitutions per site.

Figure 1. Phylogenetic sequence context consisted of high-quality complete severe acute respiratory syndrome coronavirus 2 genome sequences from a domestic ferret, Slovenia, corresponding to Pango lineage B.1.258. The context sequences were downloaded from GISAID (https://www.gisaid.org) and subsampled to 62 sequences and National Center for Biotechnology Information reference sequence NC_045512.2. The phylogenetic reconstruction using a general time-reversible plus F plus R4 substitution model was built in Figtree (Evomics, http://evomics.org) with 1,000 bootstrap replicates. The reference sequence was used as an outgroup to root the phylogenetic tree. GISAID accession numbers and isolation dates are provided. Scale bar indicates substitutions per site.

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Page created: July 13, 2021
Page updated: August 19, 2021
Page reviewed: August 19, 2021
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