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Volume 31, Number 7—July 2025

Synopsis

Community Outbreak of OXA-48–Producing Escherichia coli Linked to Food Premises, New Zealand, 2018–2022

Craig N. ThornleyComments to Author , Matthew Kelly, Max Bloomfield, Loushy Mangalasseril, Annette Nesdale, Claire Underwood, Kristin Dyet, Juliet Elvy, Jenny Szeto, Hermes Perez, Xioyun Ren, Rosemary Woodhouse, and Rhys T. White
Author affiliation: Health New Zealand Te Whatu Ora, Lower Hutt, New Zealand (C.N. Thornley, M. Kelly, L. Mangalasseril, A. Nesdale, C. Underwood); Awanui Labs Wellington, Wellington, New Zealand (M. Bloomfield); Institute of Environmental Science and Research, Porirua, New Zealand (K. Dyet, J. Elvy, J. Szeto, H. Perez, X. Ren, R. Woodhouse, R.T. White); Awanui Labs Dunedin, Dunedin, New Zealand (J. Elvy)

Main Article

Figure 2

Evolutionary reconstruction for OXA-48–producing Escherichia coli sequence type (ST)131 genomes obtained from cases and food handlers compared with publicly available genomes in study of community outbreak linked to food premises, Hutt Valley, New Zealand, August 2018–December 2022. A time-calibrated maximum clade credibility tree was inferred from 323 nonrecombinant orthologous biallelic core-genome single-nucleotide variants (SNVs) from 50 ST131 genomes. SNVs were derived from a core-genome alignment of ≈4,767,900 bp and were called against the chromosome of 18AR0845 (GenBank accession no. CP175691). The x-axis represents the emergence time estimates. Case numbers (1–25), shown in bold after the genome codes, correspond to case reference numbers shown in Appendix Table 2). Case numbers FH1–4 indicate genomes obtained from food handlers working at a community-based food premises to which 18 of the case-patients had been exposed. Asterisks indicate subsequent genomes obtained from the same case-patient or food handler.

Figure 2. Evolutionary reconstruction for OXA-48–producing Escherichia coli sequence type (ST)131 genomes obtained from cases and food handlers compared with publicly available genomes in study of community outbreak linked to food premises, Hutt Valley, New Zealand, August 2018–December 2022. A time-calibrated maximum clade credibility tree was inferred from 323 nonrecombinant orthologous biallelic core-genome single-nucleotide variants (SNVs) from 50 ST131 genomes. SNVs were derived from a core-genome alignment of ≈4,767,900 bp and were called against the chromosome of 18AR0845 (GenBank accession no. CP175691). The x-axis represents the emergence time estimates. Case numbers (1–25), shown in bold after the genome codes, correspond to case reference numbers shown in Appendix Table 2). Case numbers FH1–4 indicate genomes obtained from food handlers working at a community-based food premises to which 18 of the case-patients had been exposed. Asterisks indicate subsequent genomes obtained from the same case-patient or food handler.

Main Article

Page created: May 31, 2025
Page updated: June 17, 2025
Page reviewed: June 17, 2025
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