Volume 7, Number 3—June 2001
Research
Geographic Distribution and Genetic Diversity of Whitewater Arroyo Virus in the Southwestern United States
Charles F. Fulhorst*
, Remi N. Charrel*†, Scott C. Weaver*, Thomas G. Ksiazek‡, Robert D. Bradley§, Mary L. Milazzo*, Robert B. Tesh*, and Michael D. Bowen‡
, Remi N. Charrel*†, Scott C. Weaver*, Thomas G. Ksiazek‡, Robert D. Bradley§, Mary L. Milazzo*, Robert B. Tesh*, and Michael D. Bowen‡
Table 3
Nucleotide and amino acid sequence identities among 13 arenavirus isolates recovered from 11 woodrats and the Tamiami virusa
| Virus or strain |
|||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AV 93 | AV 93 | AV 96 | AV 96 | AV 98 | AV 96 | AV 98 | AV 98 | TVP- | AV A0 | AV A0 | AV 96 | AV 96 | |||
| Virusb | Strain | 10135 | 10040 | 010149 | 010151 | 360019 | 010154 | 360020 | 490013 | 6038 | 400212 | 400174 | 010025 | 010024 | TAM |
| WWA | AV 9310135 | -- | 100.0 | 86.5 | 86.5 | 86.5 | 85.3 | 85.3 | 82.3 | 82.6 | 79.1 | 79.1 | 83.4 | 85.1 | 71.6 |
| WWA | AV 9310040 | 100.0 | -- | 86.5 | 86.5 | 86.5 | 85.3 | 85.3 | 82.3 | 82.6 | 79.1 | 79.1 | 83.4 | 85.1 | 71.6 |
| WWA | AV 96010149 | 95.3 | 95.3 | -- | 100.0 | 100.0 | 98.1 | 98.5 | 80.1 | 80.3 | 79.5 | 78.8 | 84.4 | 85.5 | 73.7 |
| WWA | AV 96010151 | 95.3 | 95.3 | 100.0 | -- | 100.0 | 98.1 | 98.5 | 80.1 | 80.3 | 79.5 | 78.8 | 84.4 | 85.5 | 73.7 |
| WWA | AV 98360019 | 95.3 | 95.3 | 100.0 | 100.0 | -- | 98.1 | 98.5 | 80.1 | 80.3 | 79.5 | 78.8 | 84.4 | 85.5 | 73.7 |
| WWA | AV 96010154 | 94.8 | 94.8 | 98.8 | 98.8 | 98.8 | -- | 99.6 | 81.3 | 81.5 | 79.3 | 78.6 | 84.4 | 85.1 | 73.2 |
| WWA | AV 98360020 | 95.3 | 95.3 | 99.4 | 99.4 | 99.4 | 99.4 | -- | 81.3 | 81.5 | 79.5 | 78.8 | 84.4 | 85.1 | 73.4 |
| WWA | AV 98490013 | 91.9 | 91.9 | 90.7 | 90.7 | 90.7 | 90.7 | 91.3 | -- | 99.4 | 79.0 | 77.8 | 80.9 | 80.7 | 72.2 |
| WWA | TVP-6038 | 91.9 | 91.9 | 90.7 | 90.7 | 90.7 | 90.7 | 91.3 | 98.8 | -- | 79.1 | 78.0 | 81.1 | 80.1 | 72.4 |
| WWA | AV A0400212 | 88.4 | 88.4 | 88.9 | 88.9 | 88.9 | 88.9 | 89.5 | 86.6 | 86.6 | -- | 95.7 | 77.2 | 77.0 | 69.9 |
| WWA | AV A0400174 | 88.9 | 88.9 | 89.5 | 89.5 | 89.5 | 89.5 | 88.9 | 85.5 | 85.5 | 98.3 | -- | 74.7 | 75.5 | 69.9 |
| WWA | AV 96010025 | 90.7 | 90.7 | 91.3 | 91.3 | 91.3 | 91.3 | 91.3 | 87.8 | 87.8 | 84.9 | 84.9 | -- | 82.8 | 71.6 |
| WWA | AV 96010024 | 93.0 | 93.0 | 94.2 | 94.2 | 94.2 | 94.2 | 94.2 | 88.4 | 88.4 | 86.0 | 86.0 | 89.5 | -- | 72.2 |
| TAM | W-10777‡ | 77.9 | 77.9 | 78.5 | 78.5 | 78.5 | 78.5 | 78.5 | 78.5 | 78.5 | 80.2 | 80.2 | 77.3 | 78.5 | -- |
| Amino acid sequence identity (%) | |||||||||||||||
aNucleotide and amino acid sequence identities are listed above and below the dashes, respectively. bWWA = Whitewater
Arroyo, TAM = Tamiami.
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Page updated: April 26, 2012
Page reviewed: April 26, 2012
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