Volume 7, Number 6—December 2001
Research
Hepatitis E Virus Sequences in Swine Related to Sequences in Humans, the Netherlands
Wim H.M. van der Poel*
, Froukje Verschoor*, Reina van der Heide*, Maria-Inmaculada Herrera†, Amparo Vivo†, Marlou Kooreman*, and Ana Maria de Roda Husman*
, Froukje Verschoor*, Reina van der Heide*, Maria-Inmaculada Herrera†, Amparo Vivo†, Marlou Kooreman*, and Ana Maria de Roda Husman*
Table 2
Nucleotide identity (%) between NLSW Hepatitis E virus (HEV) isolates, with respect to other HEV strains, in sections of 242 bases of ORF1 and 304 bases of ORF2a
| ORF1 fragment |
ORF2 fragment |
|||||||
|---|---|---|---|---|---|---|---|---|
| HEV strain | NLSW15 | NLSW22 | NLSW50 | NLSW105 | NLSW15 | NLSW22 | NLSW50 | NLSW105 |
| NZ1 | 82.0 | 85.7 | 82.3 | 84.2 | Nab | Na | Na | na |
| Italy | 80.8 | 82.3 | 80.8 | 83.8 | Na | Na | Na | na |
| Arg1 | 82.7 | 85.7 | 83.5 | 88.4 | Na | Na | Na | na |
| Arg2 | 79.5 | 83.3 | 81.0 | 84.8 | Na | Na | Na | na |
| US1 | 80.5 | 92.9 | 82.7 | 87.2 | 86.7 | 90.9 | 83.9 | 86.4 |
| US2 | 80.8 | 91.4 | 83.1 | 85.7 | 85.7 | 90.9 | 83.6 | 86.7 |
| USswine | 81.2 | 87.6 | 83.5 | 84.2 | 86.1 | 90.0 | 83.0 | 85.7 |
| NLSW15 | 100.0 | 82.0 | 94.7 | 83.8 | 100.0 | 83.8 | 90.9 | 82.7 |
| NLSW22 | 82.0 | 100.0 | 84.2 | 87.6 | 83.8 | 100.0 | 83.3 | 85.7 |
| NLSW50 | 94.7 | 84.2 | 100.0 | 85.7 | 90.9 | 83.3 | 100.0 | 84.4 |
| NLSW105 | 83.8 | 87.6 | 85.7 | 100.0 | 82.7 | 85.7 | 84.4 | 100.0 |
| NLSW36 | 84.2 | 86.1 | 85.3 | 91.0 | 83.0 | 84.7 | 83.2 | 89.4 |
| NLSW82 | 93.2 | 85.3 | 93.2 | 83.8 | 91.0 | 79.5 | 91.2 | 83.3 |
| NLSW85 | 91.7 | 85.3 | 93.6 | 86.1 | 91.3 | 92.5 | 92.7 | 84.2 |
| NLSW122 | 82.7 | 95.5 | 83.5 | 88.4 | 83.2 | 82.6 | 83.8 | 86.0 |
| Greece1 | 92.1 | 82.3 | 92.9 | 83.8 | Na | Na | Na | Na |
| Greece2 | 85.7 | 80.8 | 83.1 | 79.3 | Na | Na | Na | Na |
| Egypt | Na | Na | Na | Na | 75.6 | 76.5 | 76.5 | 76.5 |
| Morocco | Na | Na | Na | Na | 77.5 | 77.2 | 78.1 | 76.5 |
| VH1 | 92.1 | 83.5 | 92.1 | 83.8 | 91.1 | 80.9 | 93.1 | 82.9 |
| VH2 | 91.0 | 83.1 | 91.7 | 83.5 | 92.4 | 80.3 | 92.4 | 81.6 |
| E11 | Na | Na | Na | Na | 92.8 | 80.9 | 91.8 | 82.6 |
| Barcelona | 79.3 | 73.7 | 78.2 | 75.9 | 76.9 | 76.2 | 77.8 | 79.0 |
| Nepal | 79.3 | 73.7 | 78.2 | 75.9 | 78.1 | 78.1 | 79.6 | 79.3 |
| Burma1 | 79.7 | 72.9 | 78.6 | 76.3 | 76.9 | 76.8 | 78.4 | 78.1 |
| India1 | 79.0 | 73.7 | 78.6 | 75.6 | 78.7 | 76.5 | 79.0 | 78.7 |
| China1 | 79.0 | 72.9 | 78.6 | 75.6 | 77.5 | 77.8 | 78.4 | 78.4 |
| Pakistan | 79.3 | 73.3 | 78.2 | 75.9 | 77.5 | 77.2 | 78.4 | 77.5 |
| New China(T1) | 80.5 | 77.8 | 79.7 | 78.6 | 79.0 | 79.6 | 78.7 | 77.2 |
| Mexico | 78.2 | 77.8 | 77.5 | 76.3 | 76.0 | 75.4 | 76.0 | 75.1 |
aFor explanation of isolates' acronyms, see Figure 2 legends.
bna= not available
Page created: December 09, 2010
Page updated: December 09, 2010
Page reviewed: December 09, 2010
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.