Volume 13, Number 11—November 2007
Dispatch
Newfound Hantavirus in Chinese Mole Shrew, Vietnam
Jin-Won Song*, Hae Ji Kang*, Ki-Joon Song*, Thang T. Truong†‡, Shannon N. Bennett†, Satoru Arai†, Ninh U. Truong‡, and Richard Yanagihara†
Table 2
Pairwise nucleotide and amino acid sequence analysis of the full-length M segments of Cao Bang virus and other hantaviruses*
| Hantavirus | CBNV | HTNV | SEOV | SOOV | DOBV | PUUV | PHV | TULV | SNV | ANDV |
|---|---|---|---|---|---|---|---|---|---|---|
| CBNV TC-3 | – | 62.6 | 62.4 | 62.5 | 62.3 | 58.1 | 57.3 | 58.3 | 58.8 | 58.0 |
| HTNV 76–118 | 61.2 | – | 71.3 | 80.6 | 70.7 | 58.0 | 57.9 | 58.8 | 57.4 | 57.6 |
| SEOV 80–39 | 60.9 | 77.1 | – | 71.1 | 70.4 | 58.6 | 57.5 | 58.8 | 56.7 | 57.2 |
| SOOV SC-1 | 60.8 | 91.2 | 76.6 | – | 70.4 | 57.8 | 58.1 | 59.4 | 58.1 | 57.4 |
| DOBV Greece | 61.7 | 77.3 | 77.2 | 60.8 | – | 58.3 | 57.1 | 58.0 | 58.3 | 57.6 |
| PUUV Sotkamo | 52.0 | 53.8 | 53.8 | 54.1 | 53.4 | – | 70.1 | 71.4 | 65.5 | 64.8 |
| PHV PH-1 | 52.4 | 54.3 | 53.6 | 54.2 | 53.5 | 75.6 | – | 73.0 | 65.5 | 63.6 |
| TULV M5302v | 52.9 | 55.7 | 54.7 | 54.8 | 55.0 | 78.9 | 80.4 | – | 66.4 | 64.8 |
| SNV NMH10 | 54.7 | 54.7 | 53.1 | 55.2 | 54.1 | 66.9 | 67.6 | 69.2 | – | 70.6 |
| ANDV Chile | 54.2 | 54.7 | 54.1 | 55.3 | 54.4 | 66.8 | 66.7 | 67.8 | 77.9 | – |
*Pairwise distances are presented as a triangular matrix, with nucleotide on the top half and amino acid similarities on the bottom half. GenBank accession nos.: Cao Bang virus (CBNV TC-3), EF543526; Hantaan virus (HTNV 76–118), NC_005219; Seoul virus (SEOV 80–39), NC_005237; Soochong virus (SOOV SC-1), AY675353; Dobrava virus (DOBV Greece), NC_005234; Puumala virus (PUUV Sotkamo), NC_005223; Prospect Hill virus (PHV PH-1), X55129; Tula virus (TULV Moravia 5302v), NC_005228; Sin Nombre virus (SNV NMH10), NC_005215; and Andes virus (ANDV Chile-9717869), NC_003467.
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