Volume 12, Number 2—February 2006
Dispatch
Novel Dengue Virus Type 1 from Travelers to Yap State, Micronesia
Yoko Nukui*†, Shigeru Tajima*, Akira Kotaki*, Mikako Ito*, Tomohiko Takasaki*, Kazuhiko Koike†, and Ichiro Kurane*
Table 2
Pairwise comparisons of full-length genome and 3´ noncoding region sequences of dengue virus type 1 (DENV-1) strains*
| Virus strain | % identify of nucleotide |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NIID04-27 |
FGA/89 |
BR/90 |
BR/97-111 |
Abidjan |
Mochizuki |
S275/90 |
16007 |
GZ/80 |
A88 |
Cambodia |
Djibouti |
WestPac74 |
|
| Full-length genome | |||||||||||||
| NIID04-27 | 91.5 | 91.5 | 91.3 | 90.9 | 93.4 | 91.9 | 93.1 | 92.3 | 96.9 | 91.7 | 91.7 | 95.6 | |
| FGA/89 | 89.5 | 98.3 | 97.9 | 94.5 | 93.7 | 93.4 | 93.5 | 92.5 | 92.3 | 92.0 | 92.1 | 93.3 | |
| BR/90 | 89.5 | 99.4 | 98.8 | 94.5 | 93.9 | 93.7 | 93.7 | 92.7 | 92.3 | 92.2 | 92.0 | 92.9 | |
| BR/97-111 | 89.3 | 98.7 | 99.4 | 94.4 | 93.7 | 93.5 | 93.5 | 92.5 | 92.2 | 92.1 | 91.8 | 92.8 | |
| Abidjan | 89.7 | 94.0 | 93.8 | 94.2 | 92.9 | 92.8 | 92.9 | 92.1 | 92.0 | 91.7 | 91.6 | 92.3 | |
| Mochizuki | 91.2 | 94.8 | 94.7 | 94.9 | 93.4 | 95.0 | 95.4 | 96.1 | 94.6 | 95.3 | 95.2 | 95.1 | |
| S275/90 | 91.2 | 91.7 | 91.5 | 91.9 | 96.6 | 94.4 | 93.8 | 96.1 | 93.0 | 96.4 | 95.2 | 93.7 | |
| 16007 | 90.8 | 96.2 | 95.9 | 95.7 | 93.2 | 97.4 | 93.4 | 94.2 | 94.2 | 93.7 | 93.5 | 94.7 | |
| GZ/80 | 90.2 | 94.1 | 93.8 | 94.4 | 93.6 | 97.4 | 94.4 | 95.7 | 93.3 | 96.7 | 98.0 | 93.9 | |
| A88 | 92.5 | 93.8 | 93.6 | 93.8 | 92.3 | 96.8 | 92.9 | 96.8 | 95.5 | 92.7 | 92.7 | 97.2 | |
| Cambodia | 89.9 | 92.1 | 92.1 | 92.1 | 96.4 | 94.4 | 96.9 | 93.6 | 95.1 | 92.8 | 95.9 | 93.4 | |
| Djibouti | 89.5 | 92.1 | 91.9 | 91.9 | 95.3 | 95.3 | 96.9 | 94.0 | 95.5 | 93.2 | 97.6 | 93.3 | |
| WestPac74 | 91.4 | 95.1 | 94.9 | 95.1 | 93.8 | 93.8 | 93.2 | 97.2 | 95.1 | 97.2 | 93.0 | 93.4 | |
| 3´ noncoding region | |||||||||||||
*The percentage nucleotide sequence identities of the complete genomes are shown in the upper right half of the table. The percentage nucleotide sequence identities of the 3´ noncoding region of the genomes are shown in the lower left half of the table. The percentage sequence homologies between NIID04-27 and each of 12 other DENV-1 strains are shown in boldface.
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