Volume 13, Number 1—January 2007
Research
Prevalence of G2P[4] and G12P[6] Rotavirus, Bangladesh
Table 1
Primer | Type | Position (nt) | Strand | Sequence (5′–3′) | Reference |
---|---|---|---|---|---|
Beg9 | VP7 | 1–28 | Plus | GGCTTTAAAAGAGAGAATTTCCGTCTGG | (13) |
End9 | VP7 | 1062–1036 | Minus | GGTCACATCATACAATTCTAATCTAAG | (13) |
RVG9 | VP7 | 1062–1044 | Minus | GGTCACATCATACAATTCT | (13) |
Con2 | VP4 | 868–887 | Minus | ATTTCGGACCATTTATAACC | (11) |
Con3 | VP4 | 11–32 | Plus | TGGCTTCGCCATTTTATAGACA | (11) |
MR-G1 | G1 | 314–335 | Plus | CAAGTACTCAAATCAGTGATGG | Present study |
MR-G2 | G2 | 436–459 | Plus | CTATGAATCCACAACTGTATTGTG | Present study |
aET3 | G3 | 689–709 | Plus | CGTTTGAAGAAGTTGCAACAG | (13) |
MR-G4 | G4 | 480–499 | Plus | GCTTCTGGTGAAGAGTTG | Present study |
aAT8 | G8 | 178–198 | Plus | GTCACACCATTTGTAAATTCG | (13) |
MR-G9 | G9 | 757–776 | Plus | GAACCATAAACTTGATGTG | Present study |
MR-P8 | P[8] | 314–335 | Minus | TCTACTGGATCGACGTGC | Present study |
MR-P4 | P[4] | 474–494 | Minus | CTATTATTAGAGGTTAAAGTC | Present study |
3T-1 | P[6] | 259–278 | Minus | TGTTGATTAGTTGGATTCAA | (11) |
4T-1 | P[9] | 385–402 | Minus | TGAGACATGCAATTGGAC | (11) |
ND2 | P[11] | 116–133 | Minus | AGCGAACTCACCAATCTG | (11) |
References
- Parashar UD, Gibson CJ, Bresse JS, Glass RI. Rotavirus and severe childhood diarrhea.Emerg Infect Dis. 2006;12:304–6.PubMedGoogle Scholar
- International Centre for Diarrhoeal Disease Research. Bangladesh. Centre for Health and Population Research. Estimated deaths due to rotavirus in Bangladesh.Health and Science Bulletin.2006;4:6–10.
- Ruiz-Palacios GM, Perez-Schael I, Velazquez FR, Abate H, Breuer T, Clemens SC, Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis.N Engl J Med. 2006;354:11–22. DOIPubMedGoogle Scholar
- Vesikari T, Matson DO, Dennehy P, van Damme P, Santosham M, Rodrigue Z, Safety and efficacy of a pentavalent human-bovine (WC3) reassortant rotavirus vaccine.N Engl J Med. 2006;354:23–33. DOIPubMedGoogle Scholar
- Estes MK. Rotaviruses and their replication. In: Howley PM, editor. Fields virology, 4th ed., vol 2. Philadelphia: Lippincott Williams & Wilkins; 2001. pp. 1747–86.
- Kapikian AZ, Hoshino Y, Chanock RM. Rotaviruses. In: Howley PM, editor. Fields virology, 4th ed., vol 2. Philadelphia: Lippincott Williams & Wilkins; 2001. pp. 1787–1833.
- Turcios RM, Curns AT, Holman RC, Pandya-Smith I, Lamonte A, Bresee JS, Temporal and geographic trends of rotavirus activity in the United States, 1997–2004.Pediatr Infect Dis J. 2006;25:451–4. DOIPubMedGoogle Scholar
- Unicomb LE, Podder G, Gentsch JR, Woods PA, Hasan KZ, Faruque ASG, Evidence of high-frequency genomic reassortment of group A rotavirus strains in Bangladesh: emergence of type G9 in 1995.J Clin Microbiol. 1999;37:1885–91.PubMedGoogle Scholar
- Ahmed MU, Urasawa S, Taniguchi K, Urasawa T, Kobayashi N, Wakasugi F, Analysis of human rotavirus strains prevailing in Bangladesh in relation to nationwide floods brought by the 1988 monsoon.J Clin Microbiol. 1991;29:2273–9.PubMedGoogle Scholar
- Ali A. Climate change impacts and adaptation assessment in Bangladesh.Clim Res. 1999;12:109–16. DOIGoogle Scholar
- Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Identification of group A rotavirus gene 4 types by polymerase chain reaction.J Clin Microbiol. 1992;30:1365–73.PubMedGoogle Scholar
- Gorziglia M, Larralde G, Kapikian AZ, Chanock RM. Antigenic relationships among human rotaviruses as determined by outer capsid protein VP4.Proc Natl Acad Sci U S A. 1990;87:7155–9. DOIPubMedGoogle Scholar
- Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens.J Clin Microbiol. 1990;28:276–82.PubMedGoogle Scholar
- Martella V, Ciarlet M, Banyai K, Lorusso E, Cavalli A, Corrente M, Identification of a novel VP4 genotype carried by a serotype G5 porcine rotavirus strain.Virology. 2006;346:301–11. DOIPubMedGoogle Scholar
- Rahman M, Matthijnssens J, Nahar S, Podder G, Sack DA, Azim T, Characterization of a novel P[25],G11 human group a rotavirus.J Clin Microbiol. 2005;43:3208–12. DOIPubMedGoogle Scholar
- Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Banyai K, Ramachandran M, Serotype diversity and reassortment between human and animal rotavirus strains: Implications for rotavirus vaccine programs.J Infect Dis. 2005;192:S146–59. DOIPubMedGoogle Scholar
- Santos N, Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine.Rev Med Virol. 2005;15:29–56. DOIPubMedGoogle Scholar
- Fun BN, Unicomb LE, Rahim Z, Banu NN, Podder G, Clemens J, Rotavirus-associated diarrhea in rural Bangladesh: two-year study of incidence and serotype distribution.J Clin Microbiol. 1991;29:1359–63.PubMedGoogle Scholar
- Unicomb LE, Bingnan F, Rahim Z, Banu NN, Gomes JG, Podder G, A one-year survey of rotavirus strains from three locations in Bangladesh.Arch Virol. 1993;132:201–8. DOIPubMedGoogle Scholar
- Unicomb LE, Kilgore PE, Faruque ASG, Hamadani JD, Fuchs GJ, Albert MJ, Anticipating rotavirus vaccines: hospital-based surveillance for rotavirus diarrhea and estimates of disease burden in Bangladesh.Pediatr Infect Dis J. 1997;16:947–51. DOIPubMedGoogle Scholar
- Ward RL, McNeal MM, Clemens JD, Sack DA, Rao M, Huda N, Reactivities of serotyping monoclonal antibodies with culture-adapted human rotaviruses.J Clin Microbiol. 1991;29:449–56.PubMedGoogle Scholar
- Bernstein DI, Glass RI, Rodgers G, Davidson BL, Sack DA. Evaluation of rhesus rotavirus monovalent and tetravalent reassortant vaccines in US children.JAMA. 1995;273:1191–6. DOIPubMedGoogle Scholar
- Bresee JS, Hummelman E, Nelson EA, Glass RI. Rotavirus in Asia: the value of surveillance for informing decisions about the introduction of new vaccines.J Infect Dis. 2005;192:S1–5. DOIPubMedGoogle Scholar
- Rahman M, Sultana R, Podder G, Faruque ASG, Matthijnssens J, Zaman K, Typing of human rotaviruses: nucleotide mismatches between VP7 gene and primer are associated with genotyping failure.Virol J. 2005;2:24. DOIPubMedGoogle Scholar
- Bahl R, Ray P, Subodh S, Shambharkar P, Saxena M, Parashar U, Incidence of severe rotavirus diarrhea in New Delhi, India, and G and P types of the infecting rotavirus strains.J Infect Dis. 2005;192:S114–9. DOIPubMedGoogle Scholar
- Chen KT, Chen PY, Tang RB, Huang YF, Lee PI, Yang JY, Sentinel hospital surveillance for rotavirus diarrhea in Taiwan, 2001–2003.J Infect Dis. 2005;192:S44–8. DOIPubMedGoogle Scholar
- Fang ZY, Wang B, Kilgore PE, Bresee JS, Zhang LJ, Sun LW, Sentinel hospital surveillance for rotavirus diarrhea in the People’s Republic of China, August 2001–July 2003.J Infect Dis. 2005;192:S94–9. DOIPubMedGoogle Scholar
- Jiraphongsa C, Bresee JS, Pongsuwanna Y, Kluabwang P, Poonawagul U, Arporntip P, Epidemiology and burden of rotavirus diarrhea in Thailand: results of sentinel surveillance.J Infect Dis. 2005;192:S87–93. DOIPubMedGoogle Scholar
- Kang G, Kelkar SD, Chitambar SD, Ray P, Naik T. Epidemiological profile of rotaviral infection in India: challenges for the 21st century.J Infect Dis. 2005;192:S120–6. DOIPubMedGoogle Scholar
- Kim JS, Kang JO, Cho SC, Jang YT, Min SA, Park TH, Epidemiological profile of rotavirus infection in the Republic of Korea: results from prospective surveillance in the Jeongeub District, 1 July 2002 through 30 June 2004.J Infect Dis. 2005;192:S49–56. DOIPubMedGoogle Scholar
- Moe K, Hummelman EG, Oo WM, Lwin T, Htwe TT. Hospital-based surveillance for rotavirus diarrhea in children in Yangon, Myanmar.J Infect Dis. 2005;192:S111–3. DOIPubMedGoogle Scholar
- Nakagomi T, Nakagomi O, Takahashi Y, Enoki M, Suzuki T, Kilgore PI. Incidence and burden of rotavirus gastroenteritis in Japan, as estimated from a prospective sentinel hospital study.J Infect Dis. 2005;192:S106–10. DOIPubMedGoogle Scholar
- Nelson EA, Tam JS, Yu LM, Ng YC, Bresee JS, Poon KH, Hospital-based study of the economic burden associated with rotavirus diarrhea in Hong Kong.J Infect Dis. 2005;192:S64–70. DOIPubMedGoogle Scholar
- Van Man N, Luan Le T, Trach DD, Thanh NT, Van Tu P, Long NT, Epidemiological profile and burden of rotavirus diarrhea in Vietnam: 5 years of sentinel hospital surveillance, 1998–2003.J Infect Dis. 2005;192:S127–32. DOIPubMedGoogle Scholar
- Singh OP. Cause-effect relationships between sea surface temperature, precipitation and sea level along the Bangladeshi coast.Theor Appl Climatol. 2001;68:233–43. DOIGoogle Scholar
- Samajdar S, Varghese V, Barman P, Ghosh S, Mitra U, Dutta P, Changing pattern of human group A rotaviruses: emergence of G12 as an important pathogen among children in eastern India.J Clin Virol. 2006;36:183–8. DOIPubMedGoogle Scholar
- Das S, Varghese V, Chaudhury S, Barman P, Mahapatra S, Kojima K, Emergence of novel human group A rotavirus G12 strains in India.J Clin Microbiol. 2003;41:2760–2. DOIPubMedGoogle Scholar
- Griffin DD, Nakagomi T, Hoshino Y, Nakagomi O, Kirkwood CD, Parashar UD, Characterization of nontypeable rotavirus strains from the United States: identification of a new rotavirus reassortant (P2A[6],G12) and rare P3[9] strains related to bovine rotaviruses.Virology. 2002;294:256–69. DOIPubMedGoogle Scholar
- Pongsuwanna Y, Guntapong R, Chiwakul M, Tacharoenmuang R, Onvimala N, Wakuda M, Detection of a human rotavirus with G12 and P[9] specificity in Thailand.J Clin Microbiol. 2002;40:1390–4. DOIPubMedGoogle Scholar
- Shinozaki K, Okada M, Nagashima S, Kaiho I, Taniguchi K. Characterization of human rotavirus strains with G12 and P[9] detected in Japan.J Med Virol. 2004;73:612–6. DOIPubMedGoogle Scholar
Page created: June 28, 2010
Page updated: June 28, 2010
Page reviewed: June 28, 2010
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.