Skip directly to search Skip directly to A to Z list Skip directly to page options Skip directly to site content

Volume 14, Number 9—September 2008


Genotyping of Orientia tsutsugamushi from Humans with Scrub Typhus, Laos

On This Page



Cite This Article


Highlight and copy the desired format.

EID Parola P, Blacksell SD, Phetsouvanh R, Phongmany S, Rolain J, Day N, et al. Genotyping of Orientia tsutsugamushi from Humans with Scrub Typhus, Laos. Emerg Infect Dis. 2008;14(9):1483-1485.
AMA Parola P, Blacksell SD, Phetsouvanh R, et al. Genotyping of Orientia tsutsugamushi from Humans with Scrub Typhus, Laos. Emerging Infectious Diseases. 2008;14(9):1483-1485. doi:10.3201/eid1409.071259.
APA Parola, P., Blacksell, S. D., Phetsouvanh, R., Phongmany, S., Rolain, J., Day, N....Raoult, D. (2008). Genotyping of Orientia tsutsugamushi from Humans with Scrub Typhus, Laos. Emerging Infectious Diseases, 14(9), 1483-1485.

To the Editor: Rickettsial diseases have been only recently identified as underrecognized but important causes of fever of unknown origin in Laos. In 2006, 63 (14.8%) of 427 adults with negative blood cultures admitted to Mahosot Hospital in Vientiane had scrub typhus, an infection caused by Orientia tsutsugamushi and transmitted by the bite of larval trombiculid mites (1). O. tsutsugamushi is characterized by a wide antigenic diversity, and isolates are conventionally classified on the basis of reactivity with hyperimmune serum against prototype strains (e.g., Karp, Kato, Gilliam, Kawasaki, Kuroki, or Shimogoshi). The 4 hypervariable regions within the 56-kDa type-specific antigen of O. tsutsugamushi, which is located on the outer membrane surface, are considered to play an essential role in type strain assignment (2).

In the Lao study (1), in addition to acute-phase serum samples, a 5-mL blood sample anticoagulated with EDTA was collected at admission from all patients. After centrifugation, buffy coat of the serum sample was removed and stored at –80°C (1). DNA was extracted from buffy coat samples of 63 patients whose conditions were diagnosed by imunofluorescence assay as scrub typhus (3). Two amplification reactions were performed, a real-time quantitative PCR with a probe targeting the O. tsutsugamushi 47-kDa outer membrane protein gene with appropriate primers and probes (4) and a standard PCR targeting a 372-nt fragment of the 56-kDa protein gene (3).

Buffy coat samples from 11 (17.5%) patients were positive for O. tsutsugamushi in the real-time quantitative PCR and 56-kDa antigen gene PCR (Table). All 11 patients were from Vientiane or Vientiane Province. PCR products for the 56-kDa gene fragments were purified and sequenced as described (3). Comparison (3,5) of amplicons for the 11 patients with each other and with GenBank sequences identified 6 genotypes. Percentages of nucleotide sequence similarity with other sequences available in GenBank ranged from 95.9% to 100% (Table). Interpretation of our results was also supported by recent phylogenetic studies that compared sequences of the entire 56-kDa type-specific antigen gene of isolates from Thailand (6). LaoUF238 and LaoUF220 genotypes clustered with those of strains related to the Karp serotype, and LaoUF136 and LaoUF187 clustered with genotypes of strains related to the Gilliam serotype (2). Other genotypes found in this study were grouped in 2 clusters that contained genotypes identified in Thailand (5) and Taiwan (7) that have not been linked to a reference serotype (Table).

Detection of O. tsutsugamushi in humans in Laos provides useful information on genotypes prevalent in this country. Our results were confirmed by using 2 target genes in 2 PCRs. No differences were found between the number of days of fever in 11 PCR-positive patients and number of days of fever in 52 PCR-negative patients. However, the PCR-negative patients may not have had bacteremia at the time of sample collection.

Diversity of O. tsutsugamushi genotypes found in Laos includes genotypes closely related to genotypes from Thailand and Taiwan. This diversity raises doubt about usual concepts because it has been thought that O. tsutsugamushi genotypes are restricted to specific geographic areas and to specific mite vectors (8). Furthermore, these results might have clinical repercussions because sequence variations within the 56-kDa protein gene correlate with antigenic diversity of genotypes of O. tsutsugamushi. This finding is supported by data for sequences of the entire 56-kDa gene of different isolates (6) and for monoclonal and human and animal polyclonal antibodies used to map antigenic differences among isolates with known sequence variations (9).

Although our data are preliminary, diversity of nucleotide sequences of the 56-kDa protein–encoding gene in isolates from Laos might limit sensitivity and specificity of serologic methods. A recent study showed that addition of a serotype to the panel of O. tsutsugamushi antigens used for testing improved sensitivity of antibody detection in patients in Thailand (10). We demonstrated that, in analysis of sera in the diagnosis of scrub typhus contracted in Laos, antigen pools should contain at least Karp and Gilliam strain antigens. Furthermore, new genotypes identified in patients in Laos might be related to previously unrecognized type strains. However, cross-reactivity with Gilliam, Kato, and Kawasaki serotypes enabled serologic diagnosis in the initial study, including 1 patient infected with a Karp-related bacteria (1).

Phylogenetic studies based on larger fragments of sequences of the 56-kDa protein–encoding gene and of other genes of O. tsutsugamushi would help to better characterize the new genotypes identified in our study and their relationship with known serotypes. Expanding the panel of antigens used to test patients suspected of having scrub typhus to take into account local antigenic diversity would improve sensitivity of serologic assays for this disease.


We thank Khalid El Karkouri for help with phylogenetic studies; the patients, Vimone Soukkhaseum, Khamphong Phiasakha, Surn Soukkhaseum, Khamthavi Frichithavong, Vang Chu, Valy Keolouangkhot, Bertrand Martinez-Aussel, Ko Chang, Chirapha Darasavath, Oudayvone Rattanavong, Siho Sisouphone, Mayfong Mayxay, Sisouphane Vidamaly, Mayboun Heuangvongsy, Chanpheng Thammavong, Bouachanh Rasachack, Bounkong Syhavong, Nicholas J. White, Suriyasack Thongpaseuth, Anisone Changthongthip, Viengmone Davong, Olay Lattana, Manivanh Vongsouvath, Kai-amporn Keopaseuth, Sengmani Symanivong, Viengmala Sihalath, and Alatsany Chandara for participating in the study; and Ponmek Dalaloy and Sommone Phounsavath for support.

This study was supported by the Wellcome Trust–Mahosot Hospital–Oxford Tropical Medicine Research Collaboration, which was supported by the Wellcome Trust of Great Britain.

Philippe Parola, Stuart D. Blacksell, Rattanaphone Phetsouvanh, Simaly Phongmany, Jean-Marc Rolain, Nicholas P.J. Day, Paul N. Newton, and Didier RaoultComments to Author 

Author affiliations: World Health Organization Collaborative Center for Rickettsial Diseases and Other Arthropod Borne Bacterial Diseases, Marseille, France (P. Parola, J.-M. Rolain, D. Raoult); Mahosot Hospital, Vientiane, Laos (S.D. Blacksell, R. Phetsouvanh, S. Phongmany, N.P.J. Day, P.N. Newton); University of Oxford, Oxford, United Kingdom (S.D. Blacksell, N.P.J. Day, P.N. Newton); Mahidol University, Bangkok, Thailand (S.D. Blacksell, N.P.J. Day);


  1. Phongmany S, Rolain JM, Phetsouvanh R, Blacksell SD, Soukkhaseum V, Rasachack B, Rickettsial infections and fever, Vientiane, Laos. Emerg Infect Dis. 2006;12:25662.PubMed
  2. Tamura A, Yamamoto N, Koyama S, Makisaka Y, Takahashi M, Urabe K, Epidemiological survey of Orientia tsutsugamushi distribution in field rodents in Saitama Prefecture, Japan, and discovery of a new type. Microbiol Immunol. 2001;45:43946.PubMed
  3. Mahajan SK, Rolain JM, Kashyap R, Bakshi D, Sharma V, Prasher BS, Scrub typhus in Himalayas. Emerg Infect Dis. 2006;12:15902.PubMed
  4. Jiang J, Chan TC, Temenak JJ, Dasch GA, Ching WM, Richards AL. Development of a quantitative real-time polymerase chain reaction assay specific for Orientia tsutsugamushi. Am J Trop Med Hyg. 2004;70:3516.PubMed
  5. Fournier PE, Siritantikorn S, Rolain JM, Suputtamongkol Y, Hoontrakul S, Charoenwat S, Detection of new genotypes of Orientia tsutsugamushi infecting humans in Thailand. Clin Microbiol Infect. 2008;14:16873.PubMed
  6. Blacksell SD, Luksameetanasan R, Kalambaheti T, Aukkanit N, Paris DH, McGready R, Genetic typing of the 56-kDa type-specific antigen gene of contemporary Orientia tsutsugamushi isolates causing human scrub typhus at two sites in north-eastern and western Thailand. FEMS Immunol Med Microbiol. 2008;52:33542. DOIPubMed
  7. Qiang Y, Tamura A, Urakami H, Makisaka Y, Koyama S, Fukuhara M, Phylogenetic characterization of Orientia tsutsugamushi isolated in Taiwan according to the sequence homologies of 56-kDa type-specific antigen genes. Microbiol Immunol. 2003;47:57783.PubMed
  8. Kawamura A, Tanaka H. Tsutsugamushi disease: an overview. Tokyo: University of Tokyo Press; 1995.
  9. Seong SY, Kim MK, Lee SM, Odgerel Z, Choi MS, Kim IS, Neutralization epitopes on the antigenic domain II of the Orientia tsutsugamushi 56-kDa protein revealed by monoclonal antibodies. Vaccine. 2000;19:29. DOIPubMed
  10. Suttinont C, Losuwanaluk K, Niwatayakul K, Hoontrakul S, Intaranongpai W, Silpasakorn S, Causes of acute, undifferentiated, febrile illness in rural Thailand: results of a prospective observational study. Ann Trop Med Parasitol. 2006;100:36370. DOIPubMed


Cite This Article

DOI: 10.3201/eid1409.071259

Related Links

Table of Contents – Volume 14, Number 9—September 2008


Please use the form below to submit correspondence to the authors or contact them at the following address:

Didier Raoult, Unité des Rickettsies, Centre National de la Recherche Scientifique–Institut de Recherche pour le Développement, Unité Mixte de Recherche 6236, World Health Organization Collaborative Center for Rickettsioses and Other Arthropod Borne Bacterial Diseases, Faculté de Médecine, 27 Bd Jean Moulin, 13005 Marseille, France;

character(s) remaining.

Comment submitted successfully, thank you for your feedback.