Volume 17, Number 11—November 2011
THEME ISSUE
CHOLERA IN HAITI
Research
Comparative Genomics of Vibrio cholerae from Haiti, Asia, and Africa
Table 2
Next-generation sequence average coverage and number of mapped reads for Vibrio cholerae isolates from Haiti, Asia, and Africa
Isolate | No. mapped Illumina reads* | Average Illumina coverage* | No. 454 aligned reads† | Average 454 coverage† |
---|---|---|---|---|
2009V-1046 | 12,100,798 | 167.5 | 288,870 | 28 |
2009V-1085 | 13,679,291 | 187.8 | 365,484 | 33 |
2009V-1096 | 14,818,679 | 205.2 | 649,798 | 60 |
2009V-1116 | 13,486,955 | 181.8 | 264,833 | 23 |
2009V-1131 | 1,370,5972 | 185.9 | 273,608 | 24 |
2010EL-1749 | 16,654,195 | 189.7 | 735,029 | 51 |
2010EL-1786 | 26,312,006 | 343.8 | 216,539 | 17 |
2010EL-1792 | 23,073,959 | 295.9 | 239,940 | 19 |
2010EL-1798 | 27,914,201 | 369.9 | 270,493 | 21 |
2010V-1014 | 15,247,545 | 195.5 | 501,200 | 44 |
3500–05 | 10,962,437 | 268.6 | 279,246 | 27 |
3546–06 | 14,625,431 | 331.0 | 238,176 | 22 |
3569–08 | 15,920,777 | 201.4 | 228,302 | 18 |
3582–05 | 12,181,066 | 302.0 | 621,605 | 62 |
C6706 | 15,578,468 | 349.4 | 363,226 | 35 |
2010EL-1961 | 9,077,044 | 229.0 | 415,643 | 40 |
2011EL-1089 | 10,841,303 | 263.2 | 194,828 | 17 |
2011EL-1133 | 12,544,418 | 283.8 | 112,039 | 10 |
2011EL-1137 | 11,703,624 | 285.2 | 505,482 | 48 |
2011EL-2010N | 12,178,627 | 323.5 | 409,268 | 41 |
2011V-1021 | 11,274,787 | 282.8 | 213,312 | 20 |
2010EL-2010H | 11,366,854 | 291.4 | 422,937 | 40 |
3554–08 | 16,149,256 | 373.9 | 498,131 | 45 |
*Determined by using GAIIe Sequencer; Illumina, San Diego, CA, USA.
†Determined by using 454 Sequencer; 454 Life Sciences, Branford, CT, USA.
1Members of the V. cholerae Outbreak Genomics Task Force are Arunmozhi Balajee, Shanna Bolcen, Cheryl A. Bopp, John Besser, Ifeoma Ezeoke, Patricia Fields, Molly Freeman, Lori Gladney, Dhwani Govil, Michael S. Humphrys, Maria Sjölund-Karlsson, Karen H. Keddy, Elizabeth Neuhaus, Michele M. Parsons, Efrain Ribot, Maryann Turnsek, Shaun Tyler, Jean M. Whichard, Anne Whitney, and the authors.