Volume 17, Number 6—June 2011
Dispatch
Possible Novel Nebovirus Genotype in Cattle, France
Jérôme Kaplon, Eric Guenau, Philippe Asdrubal, Pierre Pothier, and Katia Ambert-Balay
Table 2
Nebovirus nucleotide and amino acid identities calculated on the 3′ end polymerase and capsid*
| Variable |
Nebovirus, France | Bo/Nebraska/80/US | Bo/Newbury1/76/UK | |||||
|---|---|---|---|---|---|---|---|---|
| nt identity |
aa identity |
nt identity |
aa identity |
nt identity |
aa identity |
|||
| Polymerase | ||||||||
| Nebovirus, France (33 strains) | 88.4–100 | 96.0–100 | 87.9–90.2 | 96.6–98.0 | 76.8–79.5 | 87.9–89.3 | ||
| Bo/DijonA216/06/FR strain |
75.9–78.1 |
83.9–84.6 |
76.1 |
84.6 |
80.4 |
87.2 |
||
| Capsid | ||||||||
| Nebovirus, France (6 strains) | 85.3–97.7 | 92.9–99.6 | 85.2–91.1 | 92.9–99.0 | 84.6–92.3 | 92.9–99.2 | ||
| Bo/DijonA216/06/FR strain | 68.5–69.3 | 75.1–75.7 | 69.6 | 74.9 | 68.0 | 75.1 | ||
*Identity expressed as a percentage calculated by using MEGA 4.0 (www.megasoftware.net). nt, nucleotide; aa, amino acid.
Page created: August 03, 2011
Page updated: August 03, 2011
Page reviewed: August 03, 2011
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