Volume 17, Number 8—August 2011
Dispatch
Atypical Pestivirus and Severe Respiratory Disease in Calves, Europe
Nicola Decaro
, Maria Stella Lucente, Viviana Mari, Francesco Cirone, Paolo Cordioli, Michele Camero, Rossana Sciarretta, Michele Losurdo, Eleonora Lorusso, and Canio Buonavoglia
, Maria Stella Lucente, Viviana Mari, Francesco Cirone, Paolo Cordioli, Michele Camero, Rossana Sciarretta, Michele Losurdo, Eleonora Lorusso, and Canio Buonavoglia
Table
Nucleotide identity of HoBi-like pestivirus strain Italy-1/10-1 with reference pestiviruses in different genomic regions*
| Pestivirus species and strain | GenBank accession no. | Nucleotide identity, % |
|||
|---|---|---|---|---|---|
| Full-length genome | E2 | 5′ UTR | Npro | ||
| HoBi-like pestivirus | |||||
| Th/04_KhonKaen | FJ040215 | 90.0 | 87.7 | 92.3 | 89.4 |
| D32/00_HoBi | AY604725 (E2); AY489116 (5′ UTR); AY735486 (Npro) | NA | 94.2 | 98.3 | 95.2 |
| CH-KaHo/cont |
EU385605 (E2); AY895011 (Npro) |
NA |
93.4 |
NA |
95.2 |
| Border disease virus | |||||
| H2121 (Chamois-1) | GU270877 | 66.7 | 58.1 | 61.8 | 64.6 |
| Gifhorn | GQ902940 | 66.7 | 58.2 | 65.5 | 64.2 |
| X818 | NC_003679 | 66.9 | 59.3 | 60.7 | 66.2 |
| Reindeer |
AF144618 |
66.3 |
58.6 |
65.0 |
63.2 |
| Classical swine fever virus | |||||
| Brescia X | AY578687 | 66.9 | 58.5 | 66.6 | 66.6 |
| HCLV | AF531433 | 66.5 | 59.0 | 65.5 | 65.4 |
| Brescia | AF091661 | 66.8 | 59.0 | 66.1 | 65.4 |
| Alfort-A19 | U90951 | 66.8 | 59.0 | 66.1 | 65.8 |
| Shimen/HVRI | AY775178 | 66.8 | 59.2 | 66.6 | 67.0 |
| Riems |
AY259122 |
66.4 |
58.7 |
65.5 |
65.2 |
| Pestivirus of giraffe, H138 |
AF144617 |
65.2 |
58.0 |
72.8 |
64.2 |
| Bovine viral diarrhea virus type 1 | |||||
| ILLNC | U86600 | 66.3 | 60.9 | 69.8 | 64.0 |
| ZM-95 | AF526381 | 66.2 | 62.1 | 65.7 | 63.6 |
| Oregon-C24V | AF091605 | 66.4 | 61.1 | 68.8 | 66.2 |
| CP7-5A | AF220247 | 66.4 | 62.1 | 68.2 | 66.0 |
| SD1 | M96751 | 66.3 | 60.1 | 68.8 | 66.2 |
| Singer_Arg | DQ088995 | 66.5 | 61.4 | 69.3 | 65.0 |
| KE9 | EF101530 | 67.0 | 61.4 | 70.4 | 65.8 |
| NADL | M31182 | 65.3 | 62.0 | 69.3 | 66.2 |
| VEDEVAC |
AJ585412 |
66.4 |
61.3 |
70.9 |
66.2 |
| Bovine viral diarrhea virus type 2 | |||||
| JZ05-1 | GQ888686 | 67.4 | 59.5 | 75.0 | 63.8 |
| New York’93 | AF502399 | 67.1 | 58.7 | 74.4 | 65.0 |
| XJ-04 | FJ527854 | 67.1 | 59.3 | 74.4 | 64.2 |
| C413 | NC_002032 | 67.1 | 58.5 | 74.4 | 63.8 |
| Hokudai Lab/09 | AB567658 | 67.2 | 59.3 | 72.8 | 65.2 |
*UTR, untranslated region; NA, sequence not available.
Page created: August 15, 2011
Page updated: August 15, 2011
Page reviewed: August 15, 2011
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