The full-length genome sequence of the virus was determined as described (5). Primers used for all 11 segments are shown in Technical Appendix Table 1. Multiple sequence alignments and phylogenetic analyses were conducted by using MEGA version 5.05 (www.megasoftware.net). Sequences were deposited in GenBank (accession nos. JX271001–JX271011).

Strain 17237 possessed the unique genotype constellation G6-P[9]-I2-R2-C2-M2-A3-N1-T6-E2-H3. This constellation was compared with that of the human G6P[9] strain Se584, feline/canine-like human RVA strains (KF17, PAH136, PAI58, and 0537), and several animal strains (Table). Strain 17237 shared the same combination of genotypes with human RVA strain PAH136 (10) except for VP7 (strain 17237 contained G6 instead G3). Overall, strain 17237 shared 8–10 genotypes with RVA strains possessing the BA222-like genotype constellation and 8–9 genotypes with several bovine or bovine-like RVA strains.

Figure 1

Figure 1. . . Phylogenetic trees of the full-length nucleotide sequences of the group A rotavirus (RVA) virus capsid protein (VP) 7, VP4, VP6, VP1, VP2, and VP3 genes. Phylogenetic trees were constructed...

Figure 2

Figure 2. . . Phylogenetic trees of the full-length nucleotide sequences of the group A rotavirus (RVA) nonstructural protein (NSP) genes. Phylogenetic trees were constructed by using the neighbor-joining method with the Kimura...

Phylogenetic analyses showed that all 11 genome segments of strain 17237 were most closely related to strains of either feline-like human or feline origin (Figures 1, 2). Strain 17237 clustered most closely with RVA/human-wt/ITA/PA43/2003/G6P[9], RVA/human-wt/JAP/KF17/2009/G6P[9], and RVA/human-wt/BEL/B1711/2002/G6P[6] strains, all of which are suspected to have at least a partial animal (bovine-like or feline-like) origin (6,7). The P[9] genome segment was most closely related to RVA strains RVA/human-wt/RUS/Nov10-N507/2010/G3P[9], BA222, and KF17. The VP1, VP6, NSP2, and NSP4 genome segments of strain 17237 were closely related to BA222, clustering in the R2, I2, N1, and E2 genotypes, respectively. This G3P[9] feline RVA strain BA222 is believed to have a common origin with animal RVA strains and RVA strains that are zoonotically transmissible to humans (11). The NSP2 gene segment of strain 17237 clustered in the N1 genotype and was distantly related to typical human Wa-like RVA strains. The VP2, NSP3, and NSP5 gene segments were closely related to RVA/human-wt/ITA/PAI58/1996/G3P[9]. The VP3, NSP1, and NSP3 genome segments clustered closely with RVA/human-wt/ITA/PAH136/1996/G3P[9]. NSP1 and NSP5 clustered closely with RVA/human-wt/USA/0537/2002/G3P[9]. These 3 human strains (PAI58–96, PAH136–96, and 0537) are believed to be of feline origin and possess a BA222-like genotype constellation.

The genome constellation of strain 17237 is similar to that of strains belonging to the tentative feline BA222-like genotype constellation (Table). It has been speculated that several of these BA222-like RVA strains resulted from multiple reassortment events among RVA strains originating from different hosts (cattle, other ruminants, humans, cats, dogs) (10,11). However, a recent article speculates that this genotype constellation, although reminiscent to bovine-like RVA strains, might represent a true feline genotype constellation (12).

Our results support this hypothesis in 2 ways. The first source of support comes from the fact that BA222-like RVA strains have been detected on several continents: Europe (Italy), North America (United States), Asia (Japan), and now Africa (Tunisia) (7,10). RVA strains with this BA222-like genotype constellation are much more likely to circulate in a certain host species rather than result from distinct multiple reassortment events in each of the above-mentioned countries. The second source of support comes from the fact that our phylogenetic analyses confirmed that each of the 11 gene segments of strain 17237 was more closely related to BA222-like RVA strains than to bovine or bovine-like RVA strains. This finding strengthens the hypothesis that each of the BA222-like RVA strains did not result from individual multiple reassortment events but rather that this genotype constellation now circulates (most likely in cats) around the world and might have resulted from >1 reassortment events in the more distant past.

To further support or refute this hypothesis, more complete genomes must be determined from RVA strains from cats and dogs. Moreover, because P[9] is believed to be typical for feline/canine RVA strains, it would be intriguing to determine whether this strain could persist in the human population and could become competitive with already established P genotypes in humans. The recently emerged human G9 RVA strain is believed to have originated from pigs and to have become established in the human population as the fifth major human RVA genotype, after multiple genome reassortment events with typical human Wa-like RVA strains (15).

The unusual G6P[9] RVA strain 17237 most likely resulted from direct interspecies transmission from a cat to a human. Interspecies transmission increases potential for spread of unusual and uncommon RVA strains. The findings of this study highlight the need for continuous monitoring of RVA strains and timely recognition of novel or rare genotypes. Continued surveillance of RVA strains in industrialized and developing countries, and in humans and animals, will provide more insights into interspecies transmission processes of RVAs. In turn, this information could help determine how the introduction of novel genes might affect the evolution of the RVA populations that infect humans.