Volume 20, Number 4—April 2014
Dispatch
New Alphacoronavirus in Mystacina tuberculata Bats, New Zealand
Table
Alphacoronavirus gene |
No. contigs matching alphacoronaviruses |
Range of contig lengths, bp |
Highest scoring BLASTn hit recorded against alphacoronaviruses | |
---|---|---|---|---|
e-value |
Nucleotide identity (%)† |
|||
Open reading frame 1ab | 33 | 182–1054 | 8 × 10−93 | 581/828 (77) |
Spike protein | 5 | 580–1629 | 1 × 10−19 | 362/551 (66) |
Matrix | 4 | 251–840 | 2 × 10−99 | 532/746 (71) |
Nucleocapsid | 4 | 536–890 | 6 × 10−6 | 79/109 (72) |
*BLASTn, nucleotide basic local alignment search tool (http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome).
†No. nucleotides identical between query and database sequence.
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Page updated: March 18, 2014
Page reviewed: March 18, 2014
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