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Volume 20, Number 7—July 2014
Dispatch

Widespread Rotavirus H in Commercially Raised Pigs, United States

Douglas MarthalerComments to Author , Kurt Rossow, Marie Culhane, Sagar Goyal, Jim Collins, Jelle Matthijnssens, Martha Nelson, and Max Ciarlet
Author affiliations: University of Minnesota Veterinary Diagnostic Laboratory, Saint Paul, Minnesota, USA (D. Marthaler, K. Rossow, M. Culhane, S. Goyal, J. Collins); University of Leuven, Leuven, Belgium (J. Matthijnssens); Fogarty International Center of the National Institutes of Health, Bethesda, Maryland, USA (M. Nelson); Novartis Vaccines and Diagnostics, Inc., Cambridge, Massachusetts, USA (Max Ciarlet)

Main Article

Table 2

Nucleotide and amino acid percentage identities of RVs*

RV type RVA RVB RVC RVD RVF RVG RVH
RVA
Nucleotide 65.2–100 29.7–36.2 48.5–55.7 46.4–52.1 46.3–50.8 32.9–36.7 31.7–36.2
Amino acid
 65–100
 7.5–11.3
 36.3–42.9
 33.3–39.9
 31.8–37.2
 11.1–13.5
 9.9–13.1
RVB
Nucleotide 29.7–36.2 64.8–100 30.5–34.4 29.2–32.9 30.1–32.9 50.7–57.1 47.4–51.7
Amino acid
 7.5–11.3
 66.2–100
 10.6–13.9
 10.4–12.7
 11.3–13.4
 46.1–49.4
 34.4–39.4
RVC
Nucleotide 48.5–55.7 30.5–34.4 81.4–100 47.2–49.8 47.4–48.3 33.8–34.2 31.5–34.6
Amino acid
 36.3–42.9
 10.6–13.9
 87.1–100
 34.7–35.4
 32.7–33.9
 14.4–14.6
 13.4–14.7
RVD
Nucleotide 46.4–52.1 29.2–32.9 47.2–49.8 90.1–99.6 49.8–50.7 33–34 31.9–34.4
Amino acid
 33.3–39.9
 10.4–12.7
 34.7–35.4
 98.2–99.7
 36.6–37.6
 12–12.5
 14.5–16.8
RVF
Nucleotide 46.3–50.8 30.1–32.9 47.4–48.3 49.8–50.7 NA 32.3 31–32.2
Amino acid
 31.8–37.2
 11.3–13.4
 32.7–33.9
 36.6–37.6
 NA
 11.1
 12.6–14
RVG
Nucleotide 32.9–36.7 50.7–57.1 33.8–34.2 33–34 32.3 NA 50.7–52.2
Amino acid
 11.1–13.5
 46.1–49.4
 14.4–14.6
 12–12.5
 11.1
 NA
 39.1–41.4
RVH
Nucleotide 31.7–36.2 47.4–51.7 31.5–34.6 31.9–34.4 31–32.2 50.7–52.2 70.4–100
Amino acid 9.9–13.1 34.4–39.4 13.4–14.7 14.5–16.8 12.6–14 39.1–41.4 75.3–100

*RV, rotavirus; NA, not applicable.

Main Article

Page created: June 17, 2014
Page updated: June 17, 2014
Page reviewed: June 17, 2014
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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