Volume 21, Number 10—October 2015
Research
Evolutionary and Ecological Characterization of Mayaro Virus Strains Isolated during an Outbreak, Venezuela, 2010
Albert J. Auguste, Jonathan Liria, Naomi L. Forrester, Dileyvic Giambalvo, Maria Moncada, Kanya C. Long1, Dulce Morón, Nuris de Manzione, Robert B. Tesh, Eric S. Halsey, Tadeusz J. Kochel, Rosa Hernandez, Juan-Carlos Navarro, and Nikos Vasilakis
Table 3
Nucleotide and amino acid sequence identities among 9 major genes of the MAYV VZ2010 outbreak strain and 10 representative MAYV strains, Venezuela, 2010*
| Genotype D | Genotype L | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ohio |
FSB 1131 |
ARV 0565 |
BeAn 337622 |
MAYLC |
BeH 186258 |
TRVL 15537 |
FMD 3213 |
BeH 256 |
BeAr 505411 |
||
| nsp1 | 99.4 (99.1) | 98.9 (99.1) | 98.6 (99.1) | 98.1 (98.7) | 98.4 (98.9) | 97.6 (99.1) | 97.3 (98.1) | 95.6 (98.7) | 88.6 (97.0) | 88.6 (97.0) | |
| nsp2 | 99.5 (99.7) | 98.7 (99.5) | 98.6 (99.6) | 98.4 (99.5) | 98.1 (99.1) | 96.8 (99.1) | 96.9 (98.9) | 93.7 (99.0) | 86.2 (97.4) | 86.2 (97.4) | |
| nsp3 | 99.7 (100.0) | 98.6 (100.0) | 97.8 (99.0) | 98.1 (99.2) | 97.7 (98.8) | 96.2 (98.5) | 96.7 (98.3) | 93.3 (78.4) | 82.7 (76.9) | 82.5 (76.9) | |
| nsp4 | 99.2 (100.0) | 98.3 (99.7) | 98 (99.8) | 97.8 (99.8) | 97.5 (99.8) | 97.1 (99.3) | 97.1 (99.2) | 92.5 (98.2) | 86 (97.2) | 86.2 (97.2) | |
| C | 99 (100.0) | 98.7 (99.6) | 98.7 (100.0) | 98.1 (99.6) | 97.9 (100.0) | 96.5 (99.6) | 97.0 (100.0) | 93.5 (98.8) | 87.1 (96.1) | 88 (96.9) | |
| E3 | 99.5 (100) | 98.5 (100.0) | 96.5 (100.0) | 97 (100.0) | 96.5 (100.0) | 97.5 (100.0) | 97.0 (100.0) | 93.4 (98.5) | 83.8 (90.9) | 84.8 (90.9) | |
| E2 | 99.3 (99.8) | 98.4 (99.8) | 97.9 (99.1) | 98.3 (100.0) | 97.5 (99.5) | 96.1 (99.8) | 96.4 (98.8) | 93.3 (98.8) | 86.3 (97.4) | 86.2 (96.9) | |
| 6K | 100 (100.0) | 98.3 (98.3) | 98.9 (100.0) | 98.3 (100) | 98.9 (100.0) | 98.3 (100.0) | 97.8 (100.0) | 97.8 (100.0) | 87.8 (95.0) | 88.3 (96.7) | |
| E1 | 99.5 (99.8) | 99.1 (99.8) | 98.7 (99.5) | 98.5 (99.8) | 98.4 (99.8) | 97.9 (99.3) | 97.6 (97.7) | 94.3 (98.4) | 88 (96.1) | 87.6 (96.3) | |
*Values in parentheses are amino acid identities. MAYV, Mayaro virus; nsp, nonstructural protein; C, capsid; E3, envelope small polypeptide; E2, envelope glycoprotein 2; 6K, envelope small polypeptide; E1, envelope glycoprotein 1.
1Current affiliation: Andrews University, Berrien Springs, Michigan, USA.
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